Brevundimonas sp. 'scallop': E4341_06945
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Entry
E4341_06945 CDS
T09204
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E4341_06945 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bres03021
]
E4341_06945 (rpoB)
03400 DNA repair and recombination proteins [BR:
bres03400
]
E4341_06945 (rpoB)
Enzymes [BR:
bres01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E4341_06945 (rpoB)
Transcription machinery [BR:
bres03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E4341_06945 (rpoB)
DNA repair and recombination proteins [BR:
bres03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E4341_06945 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QIF81460
LinkDB
All DBs
Position
1405308..1409423
Genome browser
AA seq
1371 aa
AA seq
DB search
MTDVAHDLAINGQIASATSFTGKKRIRKSFGRIPEAIAMPNLIEVQRASYEQFLQREVRP
GVRKEQGIEAVFKSVFPIKDFNERAILEYVSYEFEEPKYDVEECIQRDMTYAAPLKVKLR
LIVFETDEETGARSVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDH
DKGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLMGLGMDGEE
ILKTFYETVPYEKRGEGWVTPYKAERWRGVKPEFDLIDADTGEVVAQAGQKISARAAKKL
GETTTSLSLAADALVTKYLANDAVNFETGEIFAEAGDELDAPTIEVLEQNGFTTIEVLDI
DHVTVGAYMRNTLRVDKNDNREDALFDVYRVMRPGEPPTPEAAEAMFNSLFFDSERYDLS
AVGRVKMNMRLESPEVSDEIRVLRKEDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVG
ELLENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQ
TNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLAT
HARVNKYGFIESPYRRVKDGQAQGEVVYISAMEESKYTIAQANIELKNGQIVEDLVPGRI
NGESQLLNKDAVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAP
LVGTGMEAVVAVDSGAVVVARRDGVVEQIDGTRIVVRATGDVDAARSGVDIYRLSKFQRS
NQSTCINQRPIVRVGDQVKGGDVIADGPSTDLGELALGRNALVAFMPWNGYNFEDSILIS
ERIVRDDVFTSIHLEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQP
GDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGV
DKDERAMAIERAEIERLGKDRDDELKILERNVYGRLKPLIVGKNAVSGPKGIGRGELTDE
KLAEVSRGLWWQIALDDEKAMGELEAMKRQFEDARKQLDRRFEDKVEKLQRGDELPPGVM
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVDVVLNPLGVPSRM
NIGQIFETHLGWAAAGLGKQISGLLEAWQAGGQKQALIDRLTHIYGEETPLPQDEEELIE
LAKNLSKGVPFATPVFDGAHIGDIERLLEEAGLNKSAQSILYDGQTGEQFKRPVTVGYIY
MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML
TVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVELGNS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtcgcccacgatctcgccatcaacggtcagatcgcttccgccacctcgttc
accggcaagaagcgcatccgcaaatccttcgggcgtatccctgaagcgatcgcgatgcct
aacctgatcgaggttcagcgcgcttcctacgaacagttcctgcagcgcgaggtccgtccg
ggcgtccgcaaggagcagggcatcgaggcggtcttcaagtcggtgttcccgatcaaggac
ttcaacgagcgcgcgatcctggaatacgtctcgtacgagttcgaagagccgaagtacgac
gtcgaggagtgcattcagcgcgacatgacctatgccgcgccgctgaaggtcaagctgcgc
ctgatcgtgttcgaaaccgacgaggaaacgggagcccgttcggtcaaggacatcaaggag
caggacgtctacatgggcgacatcccgctcatgacggacaagggcaccttcatcgtcaac
ggcactgagcgtgtgatcgtctcgcagatgcaccgttcgccgggcgtcttcttcgaccac
gacaagggcaagacgcacagctcgggcaagctgctgttcgccgcccgcgtgatcccgtac
cgcggctcgtggctcgacttcgagttcgacgccaaggacgtggtctatgtgcgcatcgac
cgccgccgcaagctgccggccacgaccttcctgatgggtctgggcatggacggcgaagaa
atcctgaagaccttctacgagaccgtgccttacgagaagcgcggcgagggctgggtcacg
ccttacaaggccgagcgctggcgcggggttaagccggagttcgacctgatcgacgccgac
accggcgaagtggtcgcccaggccggtcagaagatcagcgcccgcgccgccaagaagctg
ggcgagacgacgacctcgctgtcgctggccgccgacgccctggtcaccaagtatctggcc
aatgacgccgtcaacttcgagaccggcgagatcttcgccgaggccggcgacgaactggac
gccccgaccatcgaagtgctggagcaaaacggcttcaccaccattgaagtgctggacatc
gaccacgtcacggtcggcgcctacatgcgcaacaccctgcgcgtggacaagaacgacaac
cgcgaggacgccctgttcgacgtctatcgcgtgatgcgtccgggcgagccgcccaccccg
gaagccgccgaggccatgttcaactcgctgttcttcgacagcgaacgctacgacctgtcg
gccgtcggccgggtcaagatgaacatgcgtctggaaagccccgaggtctccgacgagatc
cgcgtcctgcgcaaggaagacgtgctgaaggtgctgcagatcctggtcggcctgaaggac
ggccgcggcgagatcgacgacatcgacaacctgggtaaccgccgggtccgttcggtcggc
gagttgctggaaaaccagtaccgcgtcggtctgctgcgcatggagcgcgccatcaaggag
cgcatgtcctcggtcgatatcgacacggtcatgccgcacgatctgatcaacgccaagccg
gccgccgccgcggttcgcgagttcttcggttcgtcgcagctgtcgcagttcatggaccag
acgaacccgctgtcggaaatcacccacaagcgtcgtctgtcggcgcttggcccgggcggt
ctgacgcgtgagcgcgcgggctttgaagtccgcgacgtgcacccgacccactacggccgc
atctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcgttggccacc
cacgcgcgcgtcaacaagtacggcttcatcgagagcccgtaccgccgcgtgaaggacggt
caggcccagggcgaggtggtctacatctcggccatggaagagtcgaagtacacgatcgct
caggccaacatcgaactgaagaacggtcagatcgtcgaggacctggtccccggccggatc
aacggtgaatcccagctcctgaacaaggacgccgtggacatgatggacgtgtcgccgaaa
caggtcgtttcggtcgccgccgccctgatcccgttcctggaaaacgacgacgccaaccgc
gcgctgatgggcgccaacatgcaacgtcaggccgtgcctcttgtgcagtcggacgcgccg
ctggtcggcaccggcatggaagcggtcgtggccgtggactccggcgccgtcgtggtcgcc
cgtcgtgacggcgtcgtcgaacagatcgacggcacccggatcgtcgtgcgcgccaccggc
gacgtggacgccgcccgctcgggcgtcgacatctaccgcctgtcgaagttccagcgttcg
aaccagtcgacctgcatcaaccagcgcccgatcgtgcgcgttggcgatcaggtgaagggc
ggcgacgtcatcgccgacggtccgtcgacggacctgggcgaactggctctgggccgcaac
gccctggtcgccttcatgccctggaacggttacaacttcgaagactccatcctgatctcc
gagcgcatcgtgcgcgacgacgtcttcacctcgatccacctggaagagttcgaagtcgcc
gcccgcgatacgaagcttggccctgaggaaatcacgcgcgacatccccaacgtcggcgag
gaagccctgcgcaacctcgacgaagcgggcatcgtggccatcggcgccgaggtccagccg
ggcgacatcctggtcggcaaggtcacgccgaagggcgaaagcccgatgacgccggaagag
aagctgctgcgcgccatcttcggcgagaaggcttcggacgtgcgcgacacctccctgcgc
ctgccgcccggcgtcgccggcacgatcgtcgacgttcgcgtcttcaatcgtcacggcgtc
gacaaggacgagcgcgccatggcgatcgaacgcgccgagatcgaacgtctgggcaaggac
cgcgacgacgagctcaagatcctcgagcgcaacgtctatggccgcctgaagccgctgatc
gtcggcaagaacgccgtgtcggggcccaagggcatcggccgtggcgaactgaccgacgag
aagctggccgaggtcagccgtggtctgtggtggcagatcgccctggacgacgaaaaggcc
atgggcgagctggaagcgatgaagcgccagttcgaggacgctcgcaagcaactggaccgt
cgtttcgaagacaaggtcgagaagctgcagcgcggcgacgaactgccccccggcgtgatg
aagatggtcaaggtcttcgtggccgtgaagcgcaagcttcagcccggcgacaagatggcc
ggccgtcacggcaacaagggcgtcatctccaagatcctgccgatcgaggacatgccgcac
ctggaagacggcacgcacgtcgacgtcgttctgaacccgctgggcgtgccttcgcgcatg
aacatcggccagatcttcgaaacccacctaggttgggccgccgccggtctgggcaagcag
atctccggtctgctggaagcctggcaggctggtggtcagaagcaggcgctgatcgatcgt
ctgacgcatatctacggcgaagagaccccgctgccgcaggatgaggaagaactgatcgaa
ctggcgaagaacctgtccaagggcgtgcccttcgcgacccccgtcttcgacggtgcgcac
atcggcgacatcgagcgtctgctggaagaggcggggctgaacaagtcggcccagtcgatc
ctgtacgacggtcagaccggcgagcagttcaagcgtccggtcacggtcggctacatctac
atgctgaagctgcaccacctggtcgacgacaagatccacgcccgctccatcggcccgtac
tcgctggtcacccagcagcctttgggcggcaaggcgcagttcggcggtcagcgcttcggg
gaaatggaggtctgggctctggaagcttacggcgccgcctacaccctgcaggagatgctg
acggtgaagtccgacgacgtggccggccggaccaaggtctacgaggccatcgtccgtggc
gacgacagcttcgaggccggcattcccgagagcttcaacgtgctcatcaaggaaatgcgt
tcgctgggtctgaacgtggagctggggaacagctga
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