Brevundimonas sp. 'scallop': E4341_10490
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Entry
E4341_10490 CDS
T09204
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4341_10490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bres03019
]
E4341_10490
03009 Ribosome biogenesis [BR:
bres03009
]
E4341_10490
Enzymes [BR:
bres01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E4341_10490
Messenger RNA biogenesis [BR:
bres03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4341_10490
Ribosome biogenesis [BR:
bres03009
]
Prokaryotic type
rRNA processing factors
E4341_10490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QIF83062
LinkDB
All DBs
Position
2107251..2109941
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AA seq
896 aa
AA seq
DB search
MLIDAAHPEETRVAIVDGRKIEEFDFESRAKRQLRGNIYLAKVTRVEPSLQAAFIEYGGN
RHGFLAFNEIHPDYYQIPVADREAIMAEAHDDEDEDDLDRESTGDDVDPESALADEERLK
RRLMRRYKIQDVIKRRQILLVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGISR
KITNTSDRRRLKSAVSALEVPKGMGLIIRTAGAKRTKAEIKRDYQYLLRLWETIRETTLA
SHAPSVIYEEENLVRRAVRDMFDKDFDGIQVEGVEGFKEARDFMRVLMPAQAKKVHLYRG
SRPLFAANGIEELLTQIHQPVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEQTAFK
TNMEAAEEAARQLRLRDLAGLVVIDFIDMDEGKNNRAVERVLKEALSSDRARIQMGRISP
FGLMEISRQRRRLGVIEGATEACPHCQGTGRIRSAESAALMTLRAVDIEAGKNGAGVVVL
KVCTAVGLYILNHKRAYLQSLLERRGLNVIVQIDDSLGQGEHNIERTETNEDFVAPEIEM
PNLDDDFDASLYEDEDEDDDEEIIADDDDDTVESLDREDSDDDEPRERSERHDGGRDRGR
GRNRRRRGGRRDEETSDVEAVDTVSADDASDDEEDENGRRRRRGRRGGRRVREDGERDVY
TWVRGRTPSLDDPYVWFDPLNPSRSEGRPERGERPERAERPAVAQSEIEGLDVVAGEGSG
EEGGRSRRRRRRGRGRGDGPVSHEIKVENRATNEGMPPDGSPETPMAVMVEPTEAVETSA
PAIAPEPQRRRVRRKSASANVEIATEPHPDTAIEPNEATVQGAPVELDVTPREALAAEPA
EVAPVAAPTAVPVTEAVLAEPFVAPTPEIDVQAIIAEDPNQIVAPPEKPKRGWWRR
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgatgcggcgcatcccgaggagacccgggtcgccatcgtggacgggcgcaag
attgaggaattcgatttcgaatcccgtgcgaagcgccagcttcgcggcaacatctacctc
gccaaggtcactcgcgtagagcccagcctgcaggccgccttcattgaatacggcggcaat
cgccacggcttcctcgccttcaacgaaatccaccccgactactaccagatccccgtcgcc
gaccgcgaagccatcatggccgaggcgcacgatgatgaggacgaggacgatctcgaccgc
gaatcgaccggcgatgacgtcgaccccgaatcggcgctggccgacgaagagcggctgaag
cgccgcctgatgcgtcgctacaagatccaagacgtcatcaagcgccgccagatcctgctg
gtccaggtcgtcaaggacgagcgcggcgccaagggcgcagccctgaccacctggctgtcg
ctggccggccgctactgcgtgctgatgcccaacaccggcaagggcggcggcatttcgcgc
aagatcacgaacacctctgaccgtcgtcgcctgaagagcgccgtctcggccctggaagtg
cccaagggcatgggcctgatcatccgcacggcgggcgccaagcgcaccaaggccgagatc
aagcgcgactatcaatatctgctgcgcctgtgggaaacgatccgcgagaccacactcgcc
tctcacgccccctcggtgatctacgaggaagagaacctggtccgccgcgctgtgcgcgac
atgttcgacaaggatttcgacggcatccaggtcgagggcgtcgagggcttcaaggaagcg
cgcgacttcatgcgcgtgctgatgccggcgcaggccaagaaggttcacctgtatcgcggc
tcgcggcccctgttcgcggccaacggcattgaagaactgctgacgcagattcatcagccg
gtcgtgccgctgaagtccggcggctatctggtgatcaaccagaccgaggccctggtagcc
atcgacgtcaactcgggtcgcgccaccaaggaacgcaacgtcgagcagacggcgttcaag
accaatatggaagcggccgaggaggccgcccgccagctgcgcctgcgcgacctcgccggc
ctggtcgtcatcgacttcatcgacatggatgagggcaagaacaaccgcgccgtcgagcgc
gtgctgaaggaggccctgtcctccgaccgcgctcgcatccagatgggccgcatttcgccc
ttcggcttgatggaaatcagccgccagcgtcgccgactgggcgtgatcgagggcgcgacc
gaagcctgcccgcactgccagggcacgggtcgcatccgctcggccgaatccgccgccctg
atgaccttgcgcgcggtcgacatcgaggccggaaagaacggcgcgggcgtcgtggtgctg
aaggtttgcaccgccgtcggcctgtacatcctgaaccacaagcgcgcctatctgcagtcg
ctcttggaacgtcgcggcctgaacgtcatcgtccagatcgacgacagcttgggtcagggc
gaacacaatatcgagcgcaccgagacgaacgaggacttcgtcgcgcccgagatcgagatg
cccaacctcgacgacgacttcgacgcctcgctgtacgaagacgaggatgaggacgacgac
gaggagatcatcgccgacgacgatgacgacaccgtcgaatccctggatcgcgaagacagc
gacgacgacgaaccgcgcgaacgttcggaacgtcacgacggcggtcgcgatcgcggtcgt
ggacgcaaccgtcgccgtcgcggcggtcgtcgcgacgaggaaacctccgacgtcgaggcc
gtcgatacggtcagcgccgacgacgcctcggacgatgaggaagacgaaaacggccgccgc
cgtcgccgtggccgccgtggcggtcgccgcgtccgcgaggatggcgagcgcgacgtctac
acctgggttcgcggccgcacgccgtcgctggacgacccctatgtctggttcgacccgctg
aaccccagccgctcggaaggtcgtccggaacgcggcgagcgccctgagcgggcagaacgt
cccgctgtcgctcagtccgagatcgaaggcctggatgtcgttgctggcgaaggctccggc
gaggaaggcggccgttcgcgtcgccgccgtcgtcggggtcgcggtcgtggcgacggtccc
gtcagccacgagatcaaggtcgagaaccgcgccaccaacgaaggcatgccgcccgacggc
tcgcccgagacgccgatggccgtcatggtcgagccgaccgaggccgtcgaaacgtctgcc
ccggccatcgcgcccgaacctcagcgtcgtcgcgtgcgccgcaagtcggccagcgccaac
gtcgagatcgcgaccgaaccgcatcccgacaccgccatcgagccgaacgaggccacggtc
caaggcgcgccggtcgagctggacgtgacaccgcgtgaggcgctggccgccgaaccggcc
gaggtcgccccggtcgccgccccgacggcggttccagtgaccgaggccgtcttggccgag
cccttcgtcgcccccacgccggagatcgacgtccaggccatcatcgccgaagatccgaac
cagatcgtcgcaccgcccgaaaagcccaagcgcgggtggtggcgccgctga
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