Brevundimonas sp. 'scallop': E4341_11970
Help
Entry
E4341_11970 CDS
T09204
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E4341_11970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bres03400
]
E4341_11970
Enzymes [BR:
bres01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E4341_11970
DNA repair and recombination proteins [BR:
bres03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E4341_11970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
MFD_D3
UB2H
SecA_DEAD
AAA_30
Cas3-like_C_2
RecG_dom3_C
Helicase_RecD
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QIF82358
LinkDB
All DBs
Position
complement(2410220..2413525)
Genome browser
AA seq
1101 aa
AA seq
DB search
MKSSPADTDLSATGQQVLVGGPAPEQDDGKRWKMPAAAVAAGLAEMKTKRSQAVVFIATS
ERRADEIAAALSPMVKDAEVMVLPPWDCLPYDRAAPSRESMGRRMAVLAALNEASARPVF
LVASPDAIVQRTPSRERIKARLSLAAGEALDREALESFLKDSGYAADERVDEPGEYALLG
AVVDVFPPASATPYRIALDEADRIIEIHAFDPVSQRRGAEIETICLTPAAEWSDRSSEDD
EADHQDTGPSIDVETSTTLFDFLDEPMILTDVGVEDRFERIRAHVAEAYDTRLRFSEGAR
PPKPGSLYLTEKDVRQALKGAKPLSVEGWAPTPAFALEKSPGRALKQFVAERREAGDRIV
LTGLPHEHRIILRLLRRHGIDAPVVLESWSAIATLQHGQIAVVTADLDTGFRQAAAGLVV
LTPSDIFGGRIARGSGDTIDAFGETELRLDDVVIHEDHGLGVLKALERFAADGVERDVLR
IEYHGGGTILAPIEEFSKIWRYGSEPDAVSLDRLNTQGWLKRRAKVSTQIDEAAAALSAR
AEARAALRTEPIAAPRQALARFAAGFAFPETADQARAIEAVLSDLGSGKPMNRLVCGDVG
FGKTEVALRAAAAVALAGKQVIVVAPTTVLARQHFEVFKRRFKDTDIQIGHLSRAADSAE
ARAVKAGLADGSMRVVVGTQALASKGLAFSSLGLVIIDEEHRFGAQMKSALAEKAPHLLS
MSATPIPRTLQSAMVGIQDVSLIASPPARRRPIRTFMSPFDAGAVRLSLMREKARGGQSF
VVVPRIEDMEPLAERLKTLTPELSVVSAHGDMSPSAIDEIMSRFSDGEGDVLLATNIIET
GLDVPSANTMLIWRPDRFGLAQLHQLRGRVGRGRRQGFTYLLSDPEAPMAAATEARLQTL
EALDRLGAGFAISGRDLDLRGGGDLVGEEQAGHVRLIGSALYQAVLARALAAAKGDPDPD
KVSPNLNVGATGHLPADYIPDETVRINLYARLARAATAEDVDALRDEAEDRFGPLPDLAE
DLFTGRRLAALARDAGVTEIVSGPKATALRIAAARRPGMEASLPLRDDRRWSEDRMIVDA
ANDQPHDTAFIEKLLTELAAA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtcacctgccgacaccgatctttccgccacgggccaacaggtcctcgttgga
gggccagcgcccgagcaggacgacggcaagcgttggaagatgccggcggcggctgtggcg
gccggacttgccgagatgaaaacaaagcgatcgcaggcggtggtgttcatagccaccagc
gaacgccgcgccgatgagattgcggcggcgctctcaccgatggtgaaggacgccgaggtg
atggttctgccgccctgggactgcctgccctacgaccgcgccgcgccttcgcgagaaagc
atggggcggcggatggccgtcttagccgccctgaacgaagccagcgcaaggcctgtgttc
ttggtcgcctcgcccgatgcgatcgtgcaacggacgccgtcgcgcgaacggatcaaggcc
cgcttgtcgctagcggcgggcgaagcgctggatcgcgaagccttggagtcgtttctgaaa
gattcgggctatgcggcggatgagcgggtcgatgaacctggcgagtacgctctgcttggc
gcggtggtcgacgtcttcccgcccgcgtctgccacgccttatcgcatcgccctggatgag
gcggaccggatcatcgagatccacgccttcgatcccgtatcgcaacgccggggcgccgag
attgagacgatctgtctgaccccggcggctgagtggagtgaccggtcttccgaggatgac
gaggccgatcatcaggatacgggcccgtcgatcgatgttgagacgtcgacgaccctgttt
gatttcctcgacgagccgatgatcctgaccgacgtgggcgtcgaggaccggttcgaacgc
attcgcgcgcatgtggccgaagcctatgacacgcgcctgcggttcagcgagggcgcgcgt
cctccgaaacccggcagcctctatttgacggaaaaggacgttcggcaggcgttgaaaggc
gccaaacccctgagcgtcgagggttgggcgccgacgccggcctttgcgctggagaagtcg
ccggggcgggccctgaaacagttcgttgctgagcggcgcgaggcgggcgatcgcatcgtc
ctgacgggattgcctcatgagcacaggatcattctgcgcctgctgcgccgacacggtatc
gatgcgcccgtggtgctggagagctggagcgcgatcgcgactctgcagcacgggcagatc
gccgtcgtaaccgccgatctggacacaggcttccgacaggcggccgccggtctagtcgtc
ctgacgccctcggacattttcggcggccggatcgcgcgaggatccggcgatacgatcgat
gcgttcggagagactgaactgcggctggacgatgtggtcatccatgaagaccacggtctg
ggcgtcctgaaggcgttggagcggttcgctgccgatggtgtggagcgcgacgttctgcgc
atcgaatatcatggcggtgggaccattctcgcgccgatcgaggagtttagcaaaatctgg
cgttatggctcggagccagacgcggtgtcgctggatcggctgaatacacagggatggctg
aagcgtcgcgccaaggtcagcacgcagatcgacgaggccgcagcggccttgtccgcccgg
gccgaagcgcgcgcagcgctgaggaccgagccgatcgccgcgccgcgtcaggcgctggcc
cggttcgccgccgggttcgccttccccgaaacggccgatcaggcgcgcgccatcgaggcg
gtcctgtcggacctgggatccggcaagcccatgaaccggctcgtctgcggtgatgtcggt
ttcggcaagaccgaggtcgccctgcgcgctgcggcggccgtggcccttgccggcaaacag
gtcatcgtcgtcgccccgaccaccgtcctggcgcgtcagcatttcgaggtcttcaagaga
cggttcaaggatactgacattcaaatcggccacctgtcgcgcgccgcagacagcgcggag
gcgcgggcggtcaaggcagggctggcggacggctccatgcgcgtcgtggtgggcacgcag
gcgctggcgtcgaaagggttagcgttttccagtcttgggcttgtcatcatcgatgaggaa
caccgcttcggcgcgcagatgaaatctgccttggcagagaaggcgccgcatctgttgtcg
atgtcggccacccccatcccgaggactcttcaaagcgccatggtcggcattcaggacgtc
agcctgatcgccagtccgcctgcgcgacgtcggccaatccgaaccttcatgagcccgttc
gacgccggggcggttcgcctgtcgctgatgcgcgagaaggcgcggggagggcagagtttc
gtggtcgtgccgcggatcgaggatatggaacccttggcggaacgcctgaagaccctgacg
cccgagctgtcggtggtctcggcgcacggtgacatgtccccatccgcgatcgacgagatt
atgagccggttctccgacggcgagggggacgtgcttttggccacgaacatcatcgagacc
ggcctggatgtgccgagcgccaatacgatgttgatctggcggccggaccggttcggcctg
gcgcagttgcatcagctgcgggggcgtgtcggccgggggcggcgacaggggttcacctat
ctgctttccgatcccgaagcgccgatggcggcggcgacggaggcccgactgcagacgctg
gaggcgctggaccgactgggggcgggcttcgcgatcagcgggcgcgatctggacctgcgc
ggcggcggcgatctggtgggcgaggaacaggccgggcatgtcaggctgatcggctcggcc
ctttaccaggccgtcctggctcgggcgctcgcggctgcaaaaggcgatcccgatccagac
aaggtctctcccaatctgaacgtcggcgcgacagggcatctgccggcggactacattccc
gacgaaaccgtgcgcatcaatctgtacgcccggttggcgcgcgcggccacggcggaagat
gtcgacgccctgcgagatgaagccgaagatcggttcggtcccttacctgacctagcagag
gatctgttcaccggccgccgcctggcggcgctcgcccgtgatgccggcgtcacggaaatc
gtatcgggaccgaaggcgacggcgttgcggatcgcagcggcgcgtcggcccggcatggaa
gcgtccttgccgttgcgcgatgatcgacgctggtccgaggatcgcatgatcgtcgatgcc
gccaacgatcaaccgcacgacacggccttcatcgagaagcttctgaccgaattggcggcg
gcctga
DBGET
integrated database retrieval system
