Brevundimonas sp. 'scallop': E4341_13730
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Entry
E4341_13730 CDS
T09204
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4341_13730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bres03019
]
E4341_13730
Enzymes [BR:
bres01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4341_13730
Messenger RNA biogenesis [BR:
bres03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4341_13730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIF83118
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All DBs
Position
2779851..2781326
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AA seq
491 aa
AA seq
DB search
MGLNKALLQALASTGYTKPTPIQEKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRLAE
NRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGGQERALQQGL
DILVAAPGRLLDHIQQKNLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSKIPAKRQNLFF
SATMPGEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVYIEQGRKRALLTEMFSDPEYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLEAFKKGKLRVLVATDIAA
RGIDVDGVSHVVNFELPHVPESYVHRIGRTARAGKDGTAVSFVAGDEMKLLRDIEKVTRQ
KIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGQGRGGRGRRAPHREGVR
PEGGGQPHRQRRNRPGETPAAPRPERAYNPLAGERVPSINDNVKPAEGEMKRRPRRRPSN
GGKGYGGAAKG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggccctgctgcaggccctggcctcgaccggctacaccaagccgacc
ccgatccaggaaaaggccattcccgacgtcatggccggcaaggacctgctgggcatcgcc
cagaccggcaccggcaagaccgccgccttcgccctgccgatcctgcatcgcctggccgaa
aaccgcatcgcccctaagccccgcacgacccgcgtgctggtcctgagccccacgcgtgaa
ctggccacccagatcggcgacagcttcaaggcctatggcgcccacctgggcttccgggtc
gcggtaatcttcggcggcgtgaaatacggcggtcaggagcgggccctgcaacagggtctg
gacatcctggtcgccgcgccgggccgtctgctggaccacattcagcagaaaaacctggat
ctgtcctcgaccgagatcttcgtgctggacgaggccgaccagatgctggacctgggcttc
atcaagccgatccgccagatcgtctcgaagatcccggccaaacgccagaacctgttcttc
tcggcgaccatgcccggcgagatcggcaagctggcgggcgaactgctgaaggacccggtc
aaggtccaggtcacgccgcagtcgaccacggtgcagcgtatcagccagtcggtcgtctat
atcgaacagggccgcaaacgcgccctgctgaccgagatgttctcggatcccgagtacacg
cgctgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggaa
gccggcggcgtcgaggccggggccatccacggcaacaagagccagcctcagcgtgagcgc
accctggaagccttcaagaagggcaagctgcgcgtcttggtcgccaccgacatcgccgcg
cgcggcatcgacgtggacggcgtctcgcacgtcgtgaacttcgaactgccgcacgtgccg
gagagctacgtccaccgcatcggccgcaccgcgcgggcgggcaaggacggcaccgccgtc
agcttcgtcgccggggacgagatgaagctgctgcgcgacatcgaaaaggtcacgcgccag
aagattccggccatcgaccgccgtaacgacaaggccctgggccagctggacgccaccatc
atggccaccggcgtcggcaagaaggcgacgatgccggaacgcgagggcggcgagcgcaac
gagggcggccagggacggggcggtcgcggccgtcgcgcgccgcaccgcgagggcgtgcgt
ccggaaggcggcggccagccgcaccgccagcgtcgcaaccgcccgggcgagaccccggcg
gccccgcgtcccgagcgcgcctacaaccccctggccggcgagcgcgtcccctcgatcaac
gacaacgtcaaaccggccgagggcgaaatgaagcgccgcccccgtcgccgcccgtcgaac
ggcggcaagggctacggcggcgccgccaagggctga
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