Brevundimonas sp. M20: FKQ52_04915
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Entry
FKQ52_04915 CDS
T10469
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
breu Brevundimonas sp. M20
Brite
KEGG Orthology (KO) [BR:
breu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
breu03016
]
FKQ52_04915
Enzymes [BR:
breu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FKQ52_04915
Transfer RNA biogenesis [BR:
breu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FKQ52_04915
Prokaryotic type
tRNA splicing ligases
FKQ52_04915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RTC_insert
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QDH72822
LinkDB
All DBs
Position
complement(1027330..1028547)
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AA seq
405 aa
AA seq
DB search
MRDYDVIDSPGAPIKAWTRGVPIEDAALKQLKNVASLPFIHKHVAVMPDVHWGMGATVGS
VIPTVGAIIPAAVGVDIGCGMMAVRTSIRAEHLPDDLSGIRSAIEAAVPHGRTDNGGRND
KGAWADEPPASAVTRWADLKAGYDAVVEKHPKAAHPRGFGHLGTLGTGNHFIELCLDEAG
DVWVMLHSGSRGVGNRFGSYFIERAKHEARRWFLNLPDQDLAYFPEGSEGFIDYVRAVSW
AQKYARANREVMMDSVLNVLRAFWPDLETTQEAVNCHHNYVSKERHFGKDVFLTRKGAVS
AKLDELGIIPGSMGAKSFIVRGKGNAESFCTCSHGAGRAMSRTEAKRRFTVEDHVRATQG
VECRKDADVIDETPMAYKDIDAVIAAQSELIEVVHTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgactatgacgtgatcgacagcccgggcgcgcctatcaaggcgtggacccgtggc
gtgccgatcgaggacgccgcgctcaagcagctgaagaacgtggcctcgctgccgttcatc
cacaagcacgtggcggtcatgccggacgtgcactggggcatgggcgcgacggtggggtcg
gtgatcccgaccgtgggggccatcatcccggccgccgtgggcgtggacatcggctgcggc
atgatggcggtgcggacctcgatccgcgccgagcacctgccggacgacctgtcgggcatc
cgttccgccatcgaggcggccgttccgcacggccggaccgacaacggcgggcgcaacgac
aagggcgcctgggccgatgagcccccggcctcggcggtcacccgctgggccgacctcaag
gccggctatgacgccgtggtggagaagcaccccaaggcggcgcacccgcgtggcttcggc
catctgggcacgctgggcacgggcaaccacttcatcgagctgtgcctcgatgaggcgggc
gacgtgtgggtgatgctgcactccggctcgcggggcgtgggcaaccgtttcggttcctac
ttcatcgagcgggccaagcatgaagcgcgtcgctggttcctgaacctgccggatcaggat
ctggcctacttcccggaaggatcggagggcttcatcgactacgtccgcgcggtgtcctgg
gcccagaagtacgcccgggccaaccgcgaggtgatgatggacagcgttctgaacgtgctg
cgcgcgttctggccggatctggagacgacgcaggaggcggtgaactgtcaccacaactac
gtctcgaaggagcgccacttcggcaaggacgtgttcctgacccggaagggcgcggtgtcg
gccaagctggacgaactgggcatcatccccggctcgatgggggcgaaatccttcatcgtg
cgcggcaagggcaatgcggaaagcttctgcacctgctcgcacggcgccggtcgggccatg
agccggaccgaggccaagcgccgcttcacggtggaggaccacgtccgcgccacccagggc
gtcgagtgccggaaggacgcagacgtgatcgacgaaacgccgatggcctacaaggacatc
gacgcggtcatcgcggcccagtccgagctgatcgaggtcgtgcacaccctgcgtcaggtg
gtgtgcgtaaagggatga
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