Brevundimonas sp. M20: FKQ52_05465
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Entry
FKQ52_05465 CDS
T10469
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
breu Brevundimonas sp. M20
Pathway
breu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
breu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FKQ52_05465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
breu03021
]
FKQ52_05465 (rpoC)
03400 DNA repair and recombination proteins [BR:
breu03400
]
FKQ52_05465 (rpoC)
Enzymes [BR:
breu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FKQ52_05465 (rpoC)
Transcription machinery [BR:
breu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FKQ52_05465 (rpoC)
DNA repair and recombination proteins [BR:
breu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FKQ52_05465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QDH72913
UniProt:
A0A514BZS7
LinkDB
All DBs
Position
1169680..1173876
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIRIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQDEFGDDGFTA
EIGAEAVRNLLMGIDLNAEAEKHRGELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMI
LNVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGETGEGKLFANMGEIDAALD
AKAVTLHTKIKARWTEMNAAGEVVTKVIDTTPGRMKLGALLPHNPNIGYRLLEKNLTKKE
IGNLIDQVYRHCGQKATVIFADQMMQLGFREAAKAGISFGKDDIVIPEAKAGLVAETRTQ
VEEYEQQYADGLITKGEKYNKVVDAWAKVTDKIADAMMGEIAQPRVLAPGQKPDINSVFM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEDDCGSTRGITLRAVVEGGDVLVSLGQRVLGRYA
AEDIKEPGGDTVLFPADTYLQEEEIEVIDKAGVQSIKVRSALTCEAEAGICAYCYGRDLA
RGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFYEATNAGVAKINGPTV
KAAHGDLVAMSRNVTVVVTVDGKDRETHKVPYGARIRVKEGGDIAKGQRLAEWDPYTTPI
LTEVAGTVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGSDLRPAMGVTNGDAYAK
LASGSDARYLLPVGAVLSVNNGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRP
KDCAVIAEMDGRVEFGRDYKNKRRIKITPEPDADGNQGEAVEFLIPKGKHISVHDGDLIQ
KGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVE
VLDSGETTLIRGDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKASLQTRSFISAASF
QETTRVLTDASVNGKRDTLEGLKENVIVGRLIPAGTGAYLRSLQKIANERDAELTQARED
AVEPLPADLALELEKSEG
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcaccccgaccttcgaccag
atccggatcgcactggcctcgccggagaagatccgctcgtggtcgttcggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgtatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaagtcaccctggcccgcgttcgtcgc
gagcgcatgggccacatcgagctggcctcgccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcatctcgctgatgctcgatatggcgctgaaggacgtcgagcgcgtcctg
tatttcgagaactacatcgtcaccgagccgggcctgaccccgctgaagcagaaccagctg
ctgacggaagacgagttctaccgttaccaggacgagttcggcgatgacggcttcaccgcc
gagatcggcgccgaggccgttcgcaatctgctgatgggcatcgacctgaacgccgaggct
gaaaagcaccgcggcgagctggccgacaacccgtcggaaatgaaggcgaagaaggcctcc
aagcgtctgaagctgatcgaggccttcctcgaaagcggcaacaagcccgagtggatgatc
ctgaacgtcgttccggtcatcccgccggaactgcgtccgctggtgccgctggacggcggc
cgcttcgcgacctcggacctgaacgacctgtatcgccgggtcatcaaccggaacaaccgc
ctgaagcgcctgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaatcggtcgacgccctgttcgacaacggccgtcgcggtcgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggtcgcttc
cgtcagaacctgctcggcaagcgcgtcgactactcgggtcgttcggtcatcaccgtgggt
ccggaactgaagctgcacgagtgcggcctgccgaaaaagatggcgctggagctgttcaag
ccgttcatctacgcgcgtctggacgccaagggcctgtcgggcaccgtcaagcagtccaag
cgcatggtggagcgcgagcagccgcaggtgtgggatatcctcgatgaggtcatccgcgaa
cacccggtcctgctgaaccgcgccccgaccctgcaccgtctgggcatccaggcgttcgag
ccgaagctgatcgagggcaaggccatccgcctgcacccgctggtctgtaccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgagcctcgaggctcagctg
gaagcgcgcgtcctgatgatgtcgacgaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatcgtcctgggtctgtactacctgtcgctggtcaaggac
ggcgaaaccggcgaaggcaagctgttcgccaacatgggtgaaatcgacgccgcgctcgac
gccaaggccgtgacccttcacacgaagatcaaggcccgctggaccgagatgaacgccgcc
ggcgaagtggtgaccaaggtcatcgacacgacgccgggccgcatgaagctcggcgcgctg
ctgccgcacaacccgaacatcggctaccgcctgctcgagaagaacctgaccaagaaggag
atcggtaacctgatcgatcaggtctatcgtcactgcggtcagaaggcgacggtcatcttc
gccgaccagatgatgcaactgggcttccgtgaagccgccaaggccggcatctcgttcggc
aaggacgacatcgtcattccggaagccaaggccggtctggtcgcggaaacccgcacccag
gtggaagagtacgagcagcaatacgctgacggcctcatcaccaagggcgagaagtacaac
aaggtcgtcgacgcctgggccaaggtcacggacaagatcgctgacgcgatgatgggcgag
atcgcgcagccgcgcgttctggctcccggccagaagccggacatcaactcggtgttcatg
atggccaactcgggcgcccgtggttcgcaggcgcagatgaagcagctgggcggcatgcgg
ggcctgatggccaagccgtcgggcgagatcatcgagaccccgattatctcgaacttcaag
gaaggcctgaccgtgctggagtacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgccaactcgggctacctgacccgtcgtctggtggacgtggcg
caggactcgatcgtcaccgaggacgattgcggctcgacgcggggcatcaccctgcgcgcc
gtggtcgaaggcggcgacgtgctggtttcgctgggccaacgtgttctgggtcgctacgcg
gccgaggacatcaaggagccgggcggcgacaccgtcctgttcccggcggacacctatctc
caggaagaggagatcgaggtcatcgacaaggccggcgtccagtcgatcaaggtccgttcg
gccctgacctgtgaagccgaagccggtatctgcgcctactgctacgggcgtgacctggcg
cgcggcaccaacgtcaacatcggtgaagccgtgggcgtcatcgccgcccagtcgatcggt
gagccgggcacccagctgaccatgcggaccttccacatcggcggcaccgcgcaggtggcg
gaaacctcgttctacgaggcgaccaacgccggtgtggccaagatcaacggcccgaccgtc
aaggcggcgcacggcgatctggtggccatgagccgcaacgtcaccgtcgtcgtcaccgtg
gacggcaaggaccgcgagacccacaaggtcccctacggcgcccgcatccgcgtcaaggaa
ggcggcgacatcgccaagggccagcgtctggcggagtgggacccctacaccaccccgatc
ctgacggaagtcgccggtacggtgcgcttcgaggacctggtcgaaggcctgtcggtcaag
gaagaaaccgacgaagcgacgggtatcgcccaacgcgtcgtcagtgactggcgcgcgtcg
ccccgcggttcggacctgcgtccggccatgggcgtgaccaacggcgacgcctacgccaag
ctggcttcgggctccgatgcccgttacctgctgcccgtgggcgcggttctgtccgtgaac
aacggcgatgaggtcaagccgggcgagatcatcgcccgcgttccgaccgaaggcgccaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgtcgtccg
aaggactgcgccgtcatcgccgaaatggatggccgcgttgagttcggtcgcgactacaag
aacaagcgccgcatcaagatcaccccggagccggatgccgacggcaaccagggcgaagcg
gtcgaattcctgatcccgaagggcaagcatatctccgtccacgacggcgatctgatccag
aagggcgactacatcatcgacggcaacccggatccgcacgatctgctgcgcatccagggc
gtcgaagcgctggccgaatacctcgtgaacgaagtgcaggaagtctatcgcctgcaaggc
gtgccgattaacgacaagcacatcgaggtcatcgtccgtcagatgctgcagaaggtcgag
gtcctggattcgggtgaaaccaccctgatccgcggcgacaccgtcgaagtggctgaagcc
gtgctggaaaacgccaaggtcgagaagcgtggcggccgtctggccaccacccagccggtc
ctgctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcgtcgttc
caggagaccacccgcgtcctcaccgacgcctcggtcaacggcaagcgcgacacgctggaa
ggcctgaaggaaaacgtcatcgtcggccgtctgatcccggccggtacgggcgcctacctg
cgcagcctgcagaagatcgccaacgagcgtgacgccgagctgacgcaagcccgcgaagac
gcggtcgagccgctgccggccgatctggccctggagctggagaagtcggaaggctga
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integrated database retrieval system