Brevundimonas sp. M20: FKQ52_06960
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Entry
FKQ52_06960 CDS
T10469
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
breu Brevundimonas sp. M20
Pathway
breu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
breu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKQ52_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breu03019
]
FKQ52_06960
Messenger RNA biogenesis [BR:
breu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FKQ52_06960
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QDH73190
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Position
1457724..1459397
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AA seq
557 aa
AA seq
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MKKRTDDELVFLPLGGSGEIGMNLNLYGYGPERDRQWLIVDVGVTFGDLSTPGVDVIVPD
PAFLEGEKIRGIVLTHAHEDHIGALGWLWTRMKAPLYATPFTAYLIREKLREAGILDQVE
LIEVPLGGTIDLGPFQVTMVTMTHSIAEPNGLAIKTPLGTILHTGDWKIDDDPVIGGVTD
ADAITRLGDEGVLAMVCDSTNVFVEGSAGSEGGVREALSELISGLKGRIAVGCFASNVAR
MDSVIRAAEAAGRRVSLAGRSMHRITAAAKHVGMLHDIKPFLSEQEARVWPADEILYLCT
GSQGEVRAALSRVAEGTHPYVKLSNGDHCIFSSRVIPGNELSVGRLQDKLADRGVRLYTE
KDHRGIHVSGHPCRDELRQMYEWARPKIAVPTHGMRRHLVEHANLARDVGVPESITPRNG
DMVRLAPGPAAIIDEVPSGRLYVDGGRLVTEQGEALHERRHASTNGVLIVSFAMDKRGKI
VSDIDVRGIGLPGDEEMPLGDSLDDLAERVEQVVGKLKGEALEDEMVIEQAISRALKKAS
QQIWDRRPIVETIILRL
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgaactgacgacgaactcgtcttcctgccgctgggcggatcgggcgagatc
gggatgaacctgaacctctacggctacggccctgagcgtgatcgccaatggctgatcgtg
gacgtgggcgtgaccttcggcgatctgtcgacgcccggcgttgacgtgatcgtgccggac
cccgccttcctcgagggcgagaaaatccgcggcatcgtgctgacccacgcgcacgaggac
catatcggcgctctcggctggctgtggacgcgcatgaaggcgccgctctacgccacgccg
ttcaccgcctatcttatccgcgagaaactgcgcgaggccggcattctggatcaggtggag
ctgatcgaggtgccgctgggcgggacgatcgatctggggccgttccaggtgaccatggtc
accatgacccactccatcgccgagccgaacggtctggcgatcaagacgccgctgggcacg
atcctgcacaccggcgactggaaaatcgatgatgatccggtcatcggcggcgtcaccgac
gccgacgccatcacccgtctgggcgacgagggcgtgctggcgatggtgtgcgattccacc
aacgtcttcgtcgaaggctcggcggggtccgagggcggcgtgcgggaggccctgtcggaa
ctgatcagcggcctgaaggggcggatcgcggtcggctgcttcgcctccaacgtcgcgcgc
atggacagcgtgatccgcgccgccgaggccgcgggccgtcgcgtgtcgctggcgggtcgg
tcgatgcaccgcatcacagccgccgccaagcacgtcggcatgctgcatgacatcaagccg
ttcctgagcgagcaggaagcccgcgtctggccggctgacgaaatcctgtacctctgcacc
ggcagccaaggcgaggtgcgcgcggcgctgtcacgcgtggccgaaggcacccacccctat
gtgaagctgtcgaacggcgatcactgcatcttctcgtcgcgggtcattccgggcaacgag
ctgtcggttgggcggctgcaggacaagctcgccgaccggggcgtgcgcctctacaccgag
aaggatcaccgcggcatccacgtctcgggccacccgtgccgggacgaactgcgccagatg
tacgaatgggcgcggccgaagatcgccgtgccgacccacggcatgcgccgccatctggtc
gagcacgccaacctggcccgggacgtcggcgttccggaatcgatcacgccgcgcaacggc
gacatggtccgtctggcccccggcccggcggcgatcatcgacgaggttccgagcggtcgt
ctgtacgtggacggcggacgtctggtcaccgaacagggcgaggcgctgcacgagcgtcgt
cacgcctcgaccaacggcgtgctgatcgtcagcttcgcgatggacaagcgcggcaagatc
gtcagcgacatcgacgtgcgcggcatcggcctgcccggcgacgaggagatgcccttgggc
gactcgctcgatgatctggcggaacgggtcgagcaggtggtcggcaagctgaaaggcgag
gcgctggaagacgaaatggtcatcgaacaggccatctcacgagcgctgaagaaggccagt
caacaaatctgggaccgcaggccgatcgtcgagacgatcatcctgcgtctttag
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