KEGG   Brevundimonas sp. M20: FKQ52_06960
Entry
FKQ52_06960       CDS       T10469                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
breu  Brevundimonas sp. M20
Pathway
breu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:breu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FKQ52_06960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:breu03019]
    FKQ52_06960
Messenger RNA biogenesis [BR:breu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FKQ52_06960
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QDH73190
LinkDB
Position
1457724..1459397
AA seq 557 aa
MKKRTDDELVFLPLGGSGEIGMNLNLYGYGPERDRQWLIVDVGVTFGDLSTPGVDVIVPD
PAFLEGEKIRGIVLTHAHEDHIGALGWLWTRMKAPLYATPFTAYLIREKLREAGILDQVE
LIEVPLGGTIDLGPFQVTMVTMTHSIAEPNGLAIKTPLGTILHTGDWKIDDDPVIGGVTD
ADAITRLGDEGVLAMVCDSTNVFVEGSAGSEGGVREALSELISGLKGRIAVGCFASNVAR
MDSVIRAAEAAGRRVSLAGRSMHRITAAAKHVGMLHDIKPFLSEQEARVWPADEILYLCT
GSQGEVRAALSRVAEGTHPYVKLSNGDHCIFSSRVIPGNELSVGRLQDKLADRGVRLYTE
KDHRGIHVSGHPCRDELRQMYEWARPKIAVPTHGMRRHLVEHANLARDVGVPESITPRNG
DMVRLAPGPAAIIDEVPSGRLYVDGGRLVTEQGEALHERRHASTNGVLIVSFAMDKRGKI
VSDIDVRGIGLPGDEEMPLGDSLDDLAERVEQVVGKLKGEALEDEMVIEQAISRALKKAS
QQIWDRRPIVETIILRL
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgaaaaaacgaactgacgacgaactcgtcttcctgccgctgggcggatcgggcgagatc
gggatgaacctgaacctctacggctacggccctgagcgtgatcgccaatggctgatcgtg
gacgtgggcgtgaccttcggcgatctgtcgacgcccggcgttgacgtgatcgtgccggac
cccgccttcctcgagggcgagaaaatccgcggcatcgtgctgacccacgcgcacgaggac
catatcggcgctctcggctggctgtggacgcgcatgaaggcgccgctctacgccacgccg
ttcaccgcctatcttatccgcgagaaactgcgcgaggccggcattctggatcaggtggag
ctgatcgaggtgccgctgggcgggacgatcgatctggggccgttccaggtgaccatggtc
accatgacccactccatcgccgagccgaacggtctggcgatcaagacgccgctgggcacg
atcctgcacaccggcgactggaaaatcgatgatgatccggtcatcggcggcgtcaccgac
gccgacgccatcacccgtctgggcgacgagggcgtgctggcgatggtgtgcgattccacc
aacgtcttcgtcgaaggctcggcggggtccgagggcggcgtgcgggaggccctgtcggaa
ctgatcagcggcctgaaggggcggatcgcggtcggctgcttcgcctccaacgtcgcgcgc
atggacagcgtgatccgcgccgccgaggccgcgggccgtcgcgtgtcgctggcgggtcgg
tcgatgcaccgcatcacagccgccgccaagcacgtcggcatgctgcatgacatcaagccg
ttcctgagcgagcaggaagcccgcgtctggccggctgacgaaatcctgtacctctgcacc
ggcagccaaggcgaggtgcgcgcggcgctgtcacgcgtggccgaaggcacccacccctat
gtgaagctgtcgaacggcgatcactgcatcttctcgtcgcgggtcattccgggcaacgag
ctgtcggttgggcggctgcaggacaagctcgccgaccggggcgtgcgcctctacaccgag
aaggatcaccgcggcatccacgtctcgggccacccgtgccgggacgaactgcgccagatg
tacgaatgggcgcggccgaagatcgccgtgccgacccacggcatgcgccgccatctggtc
gagcacgccaacctggcccgggacgtcggcgttccggaatcgatcacgccgcgcaacggc
gacatggtccgtctggcccccggcccggcggcgatcatcgacgaggttccgagcggtcgt
ctgtacgtggacggcggacgtctggtcaccgaacagggcgaggcgctgcacgagcgtcgt
cacgcctcgaccaacggcgtgctgatcgtcagcttcgcgatggacaagcgcggcaagatc
gtcagcgacatcgacgtgcgcggcatcggcctgcccggcgacgaggagatgcccttgggc
gactcgctcgatgatctggcggaacgggtcgagcaggtggtcggcaagctgaaaggcgag
gcgctggaagacgaaatggtcatcgaacaggccatctcacgagcgctgaagaaggccagt
caacaaatctgggaccgcaggccgatcgtcgagacgatcatcctgcgtctttag

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