Brevundimonas sp. M20: FKQ52_07800
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Entry
FKQ52_07800 CDS
T10469
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
breu Brevundimonas sp. M20
Brite
KEGG Orthology (KO) [BR:
breu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breu03019
]
FKQ52_07800 (hrpB)
Enzymes [BR:
breu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FKQ52_07800 (hrpB)
Messenger RNA biogenesis [BR:
breu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FKQ52_07800 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
ResIII
Flavi_DEAD
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QDH73337
UniProt:
A0A514C130
LinkDB
All DBs
Position
complement(1635695..1638112)
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AA seq
805 aa
AA seq
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MLPIHAVIDPLKAVLAQGNVAVLAAPPGAGKTTVVPLALLDQPWLGEQRVLVLEPRRLAA
RAAADRMASSLGEQAGGAVGYRTRLQSRIGPKTRIEVITEGVFTRMILDDPALDGVGAVL
FDEFHERSLDADLGLALAREAQGLLRDDLRLLVMSATLDIAGVSRLLRGAPVIEAEGRMY
PVETRYLGRNPAERFEDAVARAVRQALADETGSILVFLPGQGEIHRTARALGDRLAANVD
LVQLYGGLDKDEQDRAIEPAAPGRRKIVLATSVAETSLTIEGVRVVIDGGLSRVPRFEPS
SGLTRLATVRVSRSSAEQRRGRAGRVEPGVCYRLWDEEQTRGLVAHQRPEILEADLTAFA
LDLARWGARSPDGLALLDPPSAGAFAEARKVLTRLDALDADGALTDHGRRLTRIPLSPRL
AHMVAVASDGGDALLGANIAAVLSEPGLGGTSVDLTERLRGFDRDRSPRARDAAKLADRW
AKAAGGGKGGHPDPGGLLAEAFPERVARARGKPGEFLLASGRGAFLKPTDVMAREGWLAV
AELGGGDARDRIRLAAPVALADLEHRLEIEDRLTREPSGRMVLKRIRRIGAVVVDEKIMG
APDRKAITAALKSEIEADGLKAIRWGERASALRARLAFLSALEDGWPDVSDEGLLAERET
WLWPLLETVQSLDALADGPLADGLRALIPWDRQRALNELAPERLDTPLGSAAIDYAAEGG
PRVDIRVQELFGVKAHPTVGRGTPLTLALLSPARRPIQMTKDLPGFWAGSWKDVRADMRG
RYPRHPWPEDPSVAEATNRAKPRGT
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgatccacgccgttatcgaccctctgaaggccgtgctcgcgcaaggcaatgtc
gccgtgctggccgcgcctccgggggcgggcaagaccacggtcgtgcccctggccctgctg
gaccagccctggctgggcgaacagcgtgtgctggtcctggagccgcgacgcctcgccgca
cgggccgccgccgaccggatggcctcgtcgctgggcgagcaggcgggcggcgccgtcggc
tatcgcacccgcctccagtcgcgcatcggcccgaagacccggatcgaggtcatcaccgag
ggggtcttcacccgtatgattctggacgatcccgcgctggacggcgtcggcgcggtcctg
ttcgacgagttccatgaacgcagtctggacgctgatctcgggctggcgctcgcccgcgag
gcgcagggtctgctgcgcgatgatctgcgcctgctggtcatgtccgcgacgctcgacatc
gcgggcgtctcgaggttgctgaggggcgcgccggtcatcgaggccgaaggacggatgtat
ccggtcgagacccgctatctcggccgcaatccggccgagcggttcgaggacgccgtcgcg
cgcgccgtgcgtcaggcgttggcggacgagaccggctccatcctcgtcttcctgccgggg
cagggggagattcatcgcaccgcccgcgccctcggcgaccgcctcgcggccaatgtcgat
ctggtccagctctatggcggcctcgacaaggacgagcaggaccgggctatcgaaccggcc
gcgccgggccgccgcaagatcgttctggccacctcggtcgcggagaccagcctgaccatc
gagggggtgcgcgtggtcatcgacggcggcctgtcccgcgtgccccgtttcgagccgtcc
agcggcctgacccgactggcgacggtcagggtcagccgctcctccgccgaacagcgccgg
ggccgggcggggcgggtcgaacccggcgtctgctatcgcctgtgggacgaggaacagacg
cggggtctcgtcgcgcaccagcgcccggaaatcctcgaggccgacctgaccgccttcgcg
ctcgatctggcccgttggggcgcgcgctcgccggacggactggccctgctggacccgccg
tccgccggcgccttcgccgaggcgcgcaaggtgctgacccggctggacgccctcgacgcc
gacggcgccctgaccgaccacggccgtcgcctgacccgcatccccctgtcgccgcgtctg
gcccatatggtcgccgtggccagcgacgggggcgacgccctgctgggcgcgaacatcgcc
gccgtgctcagcgaaccgggcctcggcggaacctctgttgatctgaccgagcgcctgcgc
ggcttcgaccgcgaccgctcgccccgcgcccgcgacgccgcgaagctggcggatcgttgg
gcgaaggcggcggggggcgggaagggagggcatcccgatccgggcggcctgctggcggag
gccttcccggagcgggtcgccagggcgcgcggaaagccgggcgaattcctgctggcctcc
ggccggggcgccttccttaaacccaccgacgtcatggcgcgcgaaggttggctggccgtc
gccgagctgggcggtggagacgcccgcgatcgcatccgcctggccgcgccggtcgcgctg
gccgatctcgaacaccggctcgagatcgaggaccgactcacccgcgagccctcgggccgc
atggtgctgaagcgcatccgccggatcggcgccgtcgtggtcgacgagaagatcatgggc
gcgccggaccgcaaggcgatcaccgccgccctgaagagcgagatcgaggcggacggactg
aaggcgatccgctggggcgaacgcgcctcggccttgcgcgcccggctggccttcctgtcg
gcgcttgaggatggctggcccgacgtgtccgacgagggcctgctggccgagcgcgagacc
tggctgtggcccctgttggagacggtgcagtcgctggacgccctcgcggacggcccgctc
gccgacggcctgcgcgccctgatcccgtgggaccgccaacgcgccttgaacgagctggcg
cccgagcggctggacaccccgctgggctccgccgccatcgactacgccgccgagggcggg
ccgcgtgtcgacatccgggtgcaggagctgttcggggtgaaggcccatccgacggtcggt
cggggcacgcctctgacgctagcccttctgtcgccagcccgccgcccgatccagatgacc
aaggacctgccgggcttctgggccggctcatggaaggatgtccgcgccgacatgcgcggc
cgctacccccgccacccatggcccgaagatccgtccgtcgccgaggccacgaatcgcgcc
aagccgcgcgggacgtga
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