Brevundimonas sp. SGAir0440: E7T10_10290
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Entry
E7T10_10290 CDS
T06410
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brev
Brevundimonas sp. SGAir0440
Pathway
brev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E7T10_10290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brev03400
]
E7T10_10290 (mfd)
Enzymes [BR:
brev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E7T10_10290 (mfd)
DNA repair and recombination proteins [BR:
brev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E7T10_10290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCQ99027
UniProt:
A0A4P8QK03
LinkDB
All DBs
Position
complement(2074533..2077982)
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AA seq
1149 aa
AA seq
DB search
MDAKVEYRTDADLGGAPEGLDALIVAERLKAGGGVGLFVARDFQRSGSFVQAFQFFSKDI
EVLDYPAWDCLPYDRLSPTAGIAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKS
VTTQAGFETKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVR
LDMFGSELESIRTFDPETQRSTGQMTSVSLAPVSEALLDAAAISRFRTGYLNLFGAPGDD
PLYATISEGARRQGMEQWLPLFYETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAY
DARAEAAKAKGQASANRALPPKRLYLDAGDWNQALAGRTVRRFTPFSTGGEDAGGRLGRT
FGAERAQDSVNLFEAVAAHAAGLKAEGKRVLFASWTEGSSERLATMLADHGLDHIVAVRD
WADVQAAPKDLYLRGVLPVEHGFVTDEVAVISETDILGDRLARPRKKRRASNFLAEASAL
TTGDLVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRYGSDSE
GVQLDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFP
YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPT
TLLARQHYKTFSERFAGWPVKVRQLSRMVGAKEAAETRAGLKDGSVEIVVGTHAVLSEQV
GFRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT
PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKF
VVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQ
IRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL
LGDEQSGHIREVGVELYQQMLEDAVAELREKGEGQTVDRGWSPSINVGASVLIPEDYVPD
LNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKID
IGPRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKVAERIT
ADLARVAGA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggacgccaaggtcgaataccgaaccgacgccgatctgggcggcgcgcccgaggggttg
gacgcgctgatcgtcgccgaacgactcaaggccggcggcggtgtcggcctgttcgtcgca
cgcgactttcagaggtccggcagctttgttcaggcgtttcagttcttctcgaaagacatt
gaagtcctggattatccggcgtgggactgtctgccctatgaccgtctgagccccacggcg
ggtatcgcggcgcagcgcatggcgacgctgacgcggctggcgatgcgcaagcccggcgat
gcgccggttctggtcgtgacgacggtgtcggcggccatgcaacgcaccccgcccaagtcg
gtcacgacacaggcagggttcgagacgaaggtcggccgcgatctcgatatccaggcgctg
gagcggtatttcgccgccaacggctatgtccgggcctcgaccgtgtcggagcgcggcgag
ttcgcggtgcgcggcggggtcgtcgacgtctatccgcctggcttcgaggagcccgtccgg
ctggacatgttcggctccgagctggaatccatccgcactttcgatcccgaaacgcagcgg
tcgaccggccagatgacgtccgtgtccctcgcgccggtgtcggaggcgttgctggatgcg
gcggccatctcgaggtttcgcaccggctatctgaaccttttcggcgcgccgggcgacgat
ccgctgtatgcgacgatcagcgagggcgcgcggcgtcagggcatggagcagtggctgccg
ctgttctatgagacgctggacagcctgtttgactatctgccggacgacgcggcgatcttc
ctcgataaccaagtcgagacggcccgcgccgagcgatgggatctggtcgcggacgcctat
gatgcgcgcgccgaggcggccaaggccaagggtcaggccagcgccaatcgcgccttgccg
ccaaagcggctctatctggacgccggcgactggaatcaggcgctggcgggtcgcaccgtg
cggcgcttcacgcccttttccacgggtggcgaggatgccggcggacgtctgggccggacc
ttcggggccgagcgggcgcaggacagcgtcaatctgttcgaggcggtggcggcccacgcg
gcgggcctgaaggccgagggcaagcgggtgctgttcgcctcctggaccgaagggtcgtcg
gagcggctggcgaccatgctggccgaccacgggctggatcacatcgtcgccgtgcgcgac
tgggccgacgttcaggcggccccgaaagacctctatctgcgcggcgttctgccggtcgag
catggctttgtcaccgacgaggtggcggtcatttccgagaccgacatcctgggtgaccgt
ttggcgcgcccgcgcaagaagcgccgcgcctcgaacttcctggcggaggcgtcggccctg
acgacgggcgatctggtggttcacctggatcacgggatcggtcgctatgaagggcttaaa
acgctggagatccagcaggccccgcacgactgtctggaactgttctacgccggcgagagc
aaactttatctgccggttgaaaacattgaccttctgactcgatacgggtcggattccgag
ggcgttcagctggacaagctgggcggcgcaggctggcaggccagaaaggccaaggccaag
gaacgtctgcgcgccatggccgaggggctgatcgccctggccgccaaacgggcgctgcgc
gagaccgatgcggtcacgccgccgccgggtctgttcgccgagttctgcgcgcgcttcccc
tatgaggagaccgacgatcagctgaacgccatcggcgatgtgctggaagatctgggcaag
ggcacgccgatggatcgcctgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
cttagggccgccttcgtcgtcgccatgacggggcagcaggtggcgatcgttgcgccgacg
accctgctggcgcgccagcactacaagaccttcagcgaacgctttgccggctggcccgtg
aaggtgcgtcagttgtcgcggatggtgggcgccaaggaggcggcggagacgcgcgccggg
ctgaaggacggctcggtcgagatcgtcgtcggcacccatgcggtgctgagcgaacaggtc
ggcttccgcgatctgggcctggtcatcgtcgacgaggagcagcatttcggcgtcaagcat
aaggagaagctgaagacgctgcgcgccgatgtgcatcttttgaccctgaccgccacgccg
atcccgcgcacgcttcagatggcgctgtcgggcatccgcgagatgtcgatcatcgccacc
ccgccggtcgatcgcctggcggtgcggacctatgtcacgccgtgggacccggtcctggtg
cgcgaggctctgctgcgcgagaaatatcgcggaggtcaggcctactatgtcgcgccgcgc
ctgaaggacctgcccgccatcgagaaattcctgcgcgaacaggtgccggaggtgaagttc
gtggtcggccacggccagatgagcgcgacccagctggaggaggtgatgagcgccttctac
gatggggaatatgacgtcctggtctccaccaccatcgtggagagcgggctggatatcccg
acggccaatacgctgatcgtgcaccgcgccgacatgttcggtctagcgcagctgtatcag
atccggggccgggtcgggcggtccaaggcgcgcgcgttcgcctatctgaccacggacgcc
gtcaagccgatgacgctgtcggccgagcggcggttgcaggttctgcagtcgctcgacaat
ctgggcgccggcttccagctggccagccacgatctggaccagcgcggcggcggcaatctg
ctgggcgacgaacagtcgggccacatccgcgaggtcggcgtcgaactgtaccagcagatg
ctggaagacgccgtggcggagctgcgtgagaagggcgagggacagacggtggatcgcggt
tggtcgccgtcgatcaatgtcggcgcttctgttctaattccagaggattacgtgccggac
ctgaacgtgcgcctgagcctctatcgtcgtctttccgacgccgaacaggctgaggatcgc
gaagccttggccgccgaactgatcgaccgtttcggcccgctgccggatgaggcgcagcaa
ctgctgaagatcgtcggcatcaagtcgaactgccgcaaggcctgcatcgagaagatcgac
atcggcccgcgcggcgcggtgctgacgttgcgcgacaacagcttccccaatccggcggga
ttggtcgggctgattcagaagaaccatgcattctggaaaattcggccggatcagaagatc
gtcgtgtctggcgattggccgacggcggaggaacgtctgaaggtggccgagcggatcacc
gctgatctggcgcgggtggcgggggcgtaa
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