Brevundimonas sp. MF30-B: E4M01_04020
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Entry
E4M01_04020 CDS
T06201
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
brf
Brevundimonas sp. MF30-B
Pathway
brf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E4M01_04020 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brf03021
]
E4M01_04020 (rpoD)
Transcription machinery [BR:
brf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E4M01_04020 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QBX36998
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Position
complement(784236..786185)
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AA seq
649 aa
AA seq
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MNAQTETQETEAATDGPLLDLTDAAVKKFIKQAKTRGYVTMEELNKVLNSEEVSGDAIED
TLAMLSEMGVNVVQDEEEAAESQSTEVAAAAETAVAETPAKAAYDRTDDPVRMYLREMGS
VELLSREGEIAIAKRIEAGRDAMISGLCESALTFEAIMVWREELENNRILLREVIDLDAT
YGVLNPASLPHNQDAAQKEKEEAAAAAGETDERGLEDEDDEDDFDDGGGMSISALEAELR
DGVMEVLNAIAADFGGFRKLQDKLVEARLKGEILTAKDQKAYETLTAAISDRLKTMKLNN
NRIEALVEQLYAINKRLIGLEGRLLRLADSYGISRPEFLKAYFGSELDPNWSEQIKDMGV
RWTKFSENEAAQIADIRSKVAAVATEAGLPIDDYRRIVQTVQKGEREARQAKKEMVEANL
RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKIVRTQRQMLHEIGREATPEELAERLAMPLEKVRKVLKIAKEP
ISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFG
IGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgcagaccgagacgcaggaaaccgaagccgccactgacgggcccctgctcgat
ctgaccgacgccgccgtcaaaaaattcatcaaacaggccaagacgcgcggctatgtgacg
atggaagagctgaacaaggtcctcaacagcgaggaagtcagcggcgacgccatcgaagac
accctggccatgctgtccgaaatgggtgtcaacgtcgtccaagacgaggaagaggccgcc
gagtctcagagcacggaagtggccgccgccgccgaaaccgccgtagccgagacccccgcc
aaggccgcctacgaccgcaccgacgacccggtgcgcatgtacctgcgcgaaatgggctcg
gtcgaactgctgagccgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgc
gacgccatgatctcgggcctgtgcgaaagcgccctgacgttcgaggccatcatggtctgg
cgcgaagagctcgagaacaaccgcatcctgctgcgcgaggtcatcgacctggatgcgacc
tatggggtgctgaaccccgcctccctgccccacaatcaggatgcggcgcagaaggaaaag
gaagaagcggccgcggccgccggcgagaccgacgaacgcggccttgaggacgaggacgac
gaggacgacttcgacgacggcggcggcatgtcgatctcggcgcttgaggctgagctgcgc
gacggcgtcatggaggtcctgaacgccatcgcggccgatttcggcggcttccgcaagctg
caggacaagctggtcgaggcgcgcctgaagggcgagatccttaccgccaaggatcagaag
gcctacgagaccctgaccgcagccatcagcgatcgtctgaagacgatgaagctgaacaac
aaccgcatcgaggcgctggtcgagcagctgtacgccatcaacaaacgcctgatcgggctg
gaaggccgcctgctgcgcctggccgacagctacggtatttcgcggcccgaattcctcaag
gcctatttcggctcggagctggatccgaactggagcgagcagatcaaggacatgggcgtg
cgctggaccaagttcagcgaaaacgaagccgcccagatcgccgacatccgcagcaaggtc
gccgctgtcgccaccgaggccggcctgccgatcgacgactatcgccgcatcgtccagacc
gtccagaagggcgagcgcgaggcccgtcaggcgaagaaggaaatggtcgaggccaacctg
cgcctcgtgatctccatcgccaagaaatacaccaaccgcggcctgcagttcctggacctc
atccaggaaggcaacatcggtctgatgaaggcggtcgacaagtttgagtaccgtcgcggc
tacaagttctcgacctacgccacctggtggatccgtcaggccattacccgctcgatcgcc
gaccaggcgcgcaccatccgcattcccgtgcacatgatcgaaacgatcaacaagatcgtg
cgcacccagcgccagatgctccacgagatcggccgcgaggcgacgccggaagagctggcc
gagcgcctggccatgccgctggagaaggtccgcaaggtcctcaagatcgccaaggagccg
atctcgctcgaaaccccgatcggcgacgaggaagacagccacctcggcgacttcatcgag
gacaagaacgccgtcctgccgatcgacgccgcgattcaatcgaacctgcgcgagaccacg
acccgcgtgctggcgtcgctgacaccgcgtgaggagcgggtgctgcgcatgcgcttcggc
atcggcatgaacaccgaccacaccctggaagaggtcggccagcagttctcggtgacccgc
gaacgcatccgccagatcgaggccaaggcgctgcgcaagctgaaacaccccagccgcagc
cgcaagctgcgctccttcctggacagctga
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