Brevundimonas sp. MF30-B: E4M01_05840
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Entry
E4M01_05840 CDS
T06201
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brf
Brevundimonas sp. MF30-B
Pathway
brf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4M01_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brf03019
]
E4M01_05840
Enzymes [BR:
brf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4M01_05840
Messenger RNA biogenesis [BR:
brf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4M01_05840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBX38889
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All DBs
Position
1159440..1160885
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AA seq
481 aa
AA seq
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MGLNKALLTALASEGYVTPTPIQQKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRLAE
NRVAPKPRTTRCLILSPTRELATQIADSFKAYGQHLGFRVAVVFGGVKYGPQERAIQQGL
DVLVAAPGRLLDHLQQKTLDLSSTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFF
SATMPTEIGKLAAELLKDPVKVQVTPQATTVERIQQSVIWVEQGRKRALLTELFSDPAYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKTGKLRVLVATDIAA
RGIDVDKVTHVVNFELPFVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLKDIEKVTRQ
KIPAVDRRNDRALQALDASIMAAGVGKKASIDSAGKSEQQPRGRRNPRRDGVRPEGGGQP
HRQRKPGGQRDRTHHADRPVATYNPLAGERTTPAPAKPEGELKRRPRRRRPSNGGKGVAQ
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggctctgctgaccgcgctggccagcgagggctatgtcacccccacc
ccgatccagcagaaggccatccccgacgtgatggccggcaaggacctgctgggcatcgcc
cagacgggcaccggcaagaccgccgccttcgccctgccgatcctgcatcgcctggccgag
aaccgcgtcgcgcccaagccgcgcaccacgcgctgcctgatcctgtcgccgacgcgcgaa
ctggccacccagatcgccgacagcttcaaggcctatggccagcacctgggcttccgcgtc
gcggtggtcttcggcggcgtgaagtacggcccgcaggaacgcgccatccaacagggcctc
gatgtcttggtggccgcgcctggccgcctgctggaccacctgcagcagaagacgctggac
ctgtcgtcgaccgaaatcttcgtgctggacgaggccgaccagatgctggacctgggcttc
atcaagcccatccgtcagatcgtcagccgcatcccggccaagcgccagaacctgttcttc
tcggccaccatgccgaccgagatcggcaagctggcggctgaactgctcaaggacccggtc
aaggtccaggtcacgccccaggccaccaccgtcgagcgcatccagcagtcggtcatctgg
gtcgaacagggccgcaagcgcgccctgctgaccgagctgttctctgatcccgcctatacg
cgctgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggaa
gccggcggggtcgaagcgggcgccattcacggcaacaagagccagcctcagcgtgaacgc
gcgctggaagccttcaagaccggcaagctgcgtgtcctggtcgccaccgacatcgccgcg
cgcggcatcgacgtggacaaggtcacccatgtggtgaacttcgagctgcccttcgtgccg
gaagcctatgtccaccgcatcggccgcacggcccgcgcgggcaaggacggcaccgccatc
agcttcgtcgccggcgacgagatgaagctgctgaaggacatcgagaaggtcacgcgccag
aagatcccggcggtggaccgcaggaacgaccgcgctctgcaggcgctggacgcgtccatc
atggccgccggcgtcggcaagaaggccagcatcgatagcgcgggcaagtccgagcagcag
ccgcgcggccgccgcaacccgcgtcgcgacggcgtccggcccgagggcggcggccagccg
caccgccagcgcaagcccggcggccagcgcgatcgcacgcatcacgccgaccgtcctgtt
gcgacctacaaccccttggccggcgagcgcaccacgccggccccggccaagccggaaggc
gaactgaagcgccgtccgcgtcgccgccgtccgtcgaacggcggcaagggcgtcgcccag
gcctga
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