Brevundimonas sp. MF30-B: E4M01_11845
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Entry
E4M01_11845 CDS
T06201
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
brf
Brevundimonas sp. MF30-B
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brf03016
]
E4M01_11845
Enzymes [BR:
brf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E4M01_11845
Transfer RNA biogenesis [BR:
brf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E4M01_11845
Prokaryotic type
tRNA splicing ligases
E4M01_11845
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
RTC_insert
Motif
Other DBs
NCBI-ProteinID:
QBX38385
LinkDB
All DBs
Position
complement(2343506..2344726)
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AA seq
406 aa
AA seq
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MSHYDVIEGPEHVPIKAWTRGVPIEDAALKQLKNVASLPFIHKHVAVMPDVHWGMGATVG
SVIPTVGAIIPAAVGVDIGCGMMAVRTSIRAEHLPDDLSAIRSAIEAAVPHGRTDNGGRN
DKGAWASEPPTSAHSRWEVLKAGYDAVVDKHPKAAHARGYGHLGTLGTGNHFIELCLDEA
GDVWVMLHSGSLGVGNRFGTYFIEQAKHEMRRWHINLPDQDLAYFPEGTDGFVDYVRAVS
WAQKYARANREVMMDQVLGVLRAFWPDFETTAEAVNCHHNYVTKEKHFGKDVYLTRKGAV
SAKDGELGIIPGSMGAKSFIVRGKGNADSFCTCSHGAGRAMSRTEAKRRFTVEDHVRATE
GVECRKDAEVIDETPMAYKDIDAVIAAQTDLIEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcactacgacgtgatcgaaggtccggagcacgtgccgatcaaggcatggacccgg
ggagtgcccatcgaggatgccgcgctcaagcagcttaagaacgtcgcctcgctgccgttc
atccacaagcacgtagcggtgatgccggacgtgcactggggcatgggcgccaccgtgggg
tcggtgatcccgaccgtcggagccatcatcccggccgccgtgggcgtggacatcggctgc
gggatgatggcggtgcggacctcgatccgcgccgagcatctgcctgacgacctgtctgcc
atccgctccgccatcgaggcggcggtgccgcacggccgcaccgacaacggcggccgcaac
gacaagggcgcctgggcgtccgagccgccgacctcggcccattcccgttgggaggtgctg
aaggccggatacgacgccgtcgtggataagcaccccaaggcggcgcacgcgcgcggctat
ggccatctgggcacgctcggcacaggcaaccacttcatcgagctgtgcctcgacgaagcg
ggcgacgtgtgggtgatgctgcactccggctctctcggcgtgggcaaccggttcgggacc
tacttcattgaacaggccaagcacgagatgcgccgctggcacatcaacctgccggaccag
gacctggcctacttccccgaggggaccgacggctttgtcgactatgtccgggcggtgtcg
tgggcgcagaaatacgcccgcgccaatcgtgaggtgatgatggatcaggtcctgggggtg
ctgcgcgccttctggcccgacttcgagaccacagctgaggcggtgaactgccaccacaac
tacgtcacgaaggaaaagcacttcggcaaggacgtctacctgacccgcaagggcgcggtg
tcggccaaggacggagagctgggcatcatccccggctcgatgggggcaaagtccttcatc
gtgcgcggcaagggcaatgcggactcgttctgcacctgctcgcacggcgccggtcgggcc
atgagccggaccgaggccaagcggcgctttacggtggaggaccacgtccgcgccaccgaa
ggcgtcgaatgccgcaaggacgccgaggtgatcgacgaaacgccgatggcctacaaggac
atcgacgcggtcatcgcggcccagaccgatctgatcgaggtggttcacacactgcgtcag
gtagtgtgcgtgaagggatga
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