Brevundimonas sp. MF30-B: E4M01_12450
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Entry
E4M01_12450 CDS
T06201
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
brf
Brevundimonas sp. MF30-B
Pathway
brf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4M01_12450 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brf03019
]
E4M01_12450 (rnr)
03016 Transfer RNA biogenesis [BR:
brf03016
]
E4M01_12450 (rnr)
Enzymes [BR:
brf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E4M01_12450 (rnr)
Messenger RNA biogenesis [BR:
brf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4M01_12450 (rnr)
Transfer RNA biogenesis [BR:
brf03016
]
Prokaryotic type
tRNA degradation factors
E4M01_12450 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
FeoC
Motif
Other DBs
NCBI-ProteinID:
QBX38494
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All DBs
Position
2463688..2466003
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AA seq
771 aa
AA seq
DB search
MTKTPKRPPAGLPNKDTLVAFLREAGEAEKADIARAFGLKGAERRLLREMLKELEAEGRL
GKRGRRGFSEAGALPPVGVADVVARDADGEFYVELVKGAADAPRAVLMPDREGRGPAPGM
GDRLLVKFQRGPDGWEARLVKKLDAETGRVLGVIRKSARETRVEPVDKRSKDVLVIPPVL
AEGLRDGDLVVASIEKSDHRHGSKRGKILEVIGKEDDPRAASLLAIHAHGVPTGFSEAVE
AEAGDQALPTLKGREDLRDLPLITIDPADARDHDDAVYAARDEDPKNEGGWIVWVAIADV
AAYVRPGSALDREARDKGNSTYFPDRVEPMLPEVLSNGLCSLKQGENRACLAVRMVFDKH
GKKLGHRFVRGLMRSHASLSYEQAQSAIDGQTDDATGPIMEAILYPLWNAYRAMLKGRER
RSPLQIESAERRIRMTPEGEIASIEARVSLEAHRLIEEMMIQANVCAAETLEQKRTPLLY
RIHETPSQEKTFNLADFLSTIGKPWNKGQAPTTARFNALLEETRDTPHAEVVNEVVLRSQ
MQAIYSPENIGHFGLNLDRYAHFTSPIRRYSDLIVHRGLIRALSLGKDGLTDREIAELPA
IAEHVVMTERRSMAAERDAMDRYIAAFLEDRVGATFKGRITGVTRFGLFVRLEETGADGL
VPVSSLGNEYFTHDDRAHALVGERSGKRFVLGRQVEVRLAEATPVTGGLVLEMLSEPEAR
DPNAPAPRYGMRGRGGDGPPSRGKNRPGGPKPRNGGKPSGGLKGVRKGKRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacacccaagagaccgcctgccggtctccctaacaaagacaccctcgtcgcc
ttcctgcgcgaggccggcgaggccgaaaaggccgacatcgcccgcgccttcggcctgaag
ggcgccgagcgccggctcttgcgcgaaatgctcaaggagctcgaggccgaaggccggctg
ggcaagcgcggccgacgcggcttctccgaggcgggagccctgccccccgtcggcgtggcg
gacgtcgtggcgcgtgacgccgatggcgaattttacgtcgagctcgtcaagggcgcggca
gacgccccccgcgccgtcctgatgcccgaccgcgagggccgcggcccggcccccggcatg
ggcgaccgactgctggtcaagtttcagcgcggccccgacggctgggaggcccgactggtc
aagaagctggacgccgagaccggccgcgttctgggcgtgatccgcaagtcggcccgcgaa
acccgcgtcgagccggtcgacaagcgctctaaggacgttctggttatcccgcccgtcctg
gccgagggcctgcgcgacggcgacctggtcgtggcctcgattgagaagagcgaccaccgc
cacgggtccaagcgcggcaagatcctggaagtcataggcaaggaagacgacccgcgcgcc
gcctcgctgctggcgatccacgcccacggcgtgcccaccggcttttccgaggccgtcgaa
gccgaagccggcgatcaggccctgccgacactgaagggccgcgaggacctgcgtgatctg
ccgctgatcaccatcgatccggccgacgcgcgcgaccacgacgacgccgtctacgccgcg
cgcgacgaggatcccaagaacgagggcggctggatcgtctgggtggccatcgccgatgtc
gccgcctacgtccgccccggctcggccctggaccgcgaggcgcgcgacaagggcaactcg
acctacttccccgatcgcgtcgagccgatgctgcccgaggtgctgtccaacggcctgtgc
agcctcaagcagggcgagaaccgcgcctgcctggccgtgcgcatggtgttcgacaaacac
ggcaagaagctgggccaccgcttcgttcgcggcctgatgcgcagccacgccagcctcagc
tacgaacaggcgcaatccgccatcgacggccagacggacgatgcgaccggccccatcatg
gaggcgatcctctatccgctgtggaacgcctatcgcgccatgctgaaggggcgcgagcgc
cgcagcccgcttcagatcgagtccgccgagcgccgcatccgcatgacgcccgagggcgag
atcgcctccatcgaggcccgcgtttctctggaggcgcaccggctgatcgaggagatgatg
atccaggccaacgtctgcgccgcagagacgctggagcagaagcgcacgcccctgctctac
cggatccacgagacgcccagccaggaaaagaccttcaacctggccgacttcctgtcgacc
atcggcaagccctggaacaagggccaggcgccgaccaccgcgcgcttcaacgccctgctg
gaagagacccgcgacacgccgcacgccgaggtcgtcaacgaggtggttctgcgcagccag
atgcaggccatctacagccccgagaacatcggccacttcggtctgaacctggatcgctac
gcccacttcacctcgccgatccggcgctattccgatctgatcgtgcaccggggccttatc
cgggcgctcagcctgggcaaggacgggctgacggaccgcgagatcgcggagttgccggcc
atcgccgagcacgtcgtcatgaccgagcgccgctccatggccgccgagcgcgacgccatg
gaccgctatatcgccgccttcctggaggaccgcgtgggcgcgaccttcaaggggcgcatc
accggcgtgacgcgcttcggcctgttcgtgcggctggaggagacgggcgccgacggcctg
gtccccgtctcgtcgctgggcaacgaatatttcacccacgacgaccgcgcccacgccctg
gtcggcgaacgcagcggcaagcggttcgtgctgggccgtcaggtcgaggtgcggctggcc
gaggcgacgccggtcaccggcggcctggtcctggagatgctcagcgagcccgaggcccgc
gatccgaatgcgcccgcgccccgctacggcatgcgcggacggggcggcgacggcccgccc
tctcggggaaagaaccgccccggtggtccgaaaccgcgcaacggcggcaagccgtccggc
ggacttaagggcgtgcgcaagggcaagcggcgttga
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