Mycetohabitans rhizoxinica: RBRH_02333
Help
Entry
RBRH_02333 CDS
T01355
Name
(GenBank) Diaminopimelate decarboxylase (EC 4.1.1.20)
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh00300
Lysine biosynthesis
brh00470
D-Amino acid metabolism
brh01100
Metabolic pathways
brh01110
Biosynthesis of secondary metabolites
brh01120
Microbial metabolism in diverse environments
brh01230
Biosynthesis of amino acids
Module
brh_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RBRH_02333
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RBRH_02333
Enzymes [BR:
brh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RBRH_02333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
SH3BP5
Motif
Other DBs
NCBI-ProteinID:
CBW74592
UniProt:
E5APQ8
LinkDB
All DBs
Position
complement(982757..984019)
Genome browser
AA seq
420 aa
AA seq
DB search
MVNAFAYVDAQLHVERVPAGQLAEQYGTPLYVYSRAALTDAYQAYAGACTGRRAKVHYAV
KANSNLAVLNVFARLGAGFDIVSGGELARVLAAGGKPHDVVFSGVGKNAADMRMALEAGV
RCFNVESLAELARLNQIAGESGRIAPISLRVNPDVDAKTHPYISTGLKANKFGVAFDDAR
AAYRTALGMKHVRIAGIDCHIGSQITEISPYLDAIDKVLELVAQVEADGAPIDHIDVGGG
LGIRYDDETPPNIGTFVKTILDHFDRRGHGHREIWFEPGRSLVGNAGILLTRVEYLKPGA
VKHFAIVDAAMNDLARPAMYDAYHAIDAVAPRDGRPPVTYDIVGPVCESGDWLARDRSLA
LEPGDLLAIRSTGAYGFVMSSNYNTRPRAAELLVDGEQVHVARRRETLAQLMDGESVLPD
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggtcaatgccttcgcctacgtcgatgctcaactgcacgttgaacgcgtacccgccggc
cagctcgccgaacaatacggcacgccgctctacgtctattcgcgtgctgcgctgaccgac
gcctaccaggcctatgcgggtgcgtgcaccggccgccgcgccaaggtccattacgcggtc
aaggccaacagcaaccttgccgtgctgaatgtgttcgcccgcctgggcgccggattcgat
atcgtctccggcggcgaactcgcgcgggtgctcgccgctggcggcaagccgcacgacgtg
gtgttttccggcgtcggcaagaatgcagccgacatgcgcatggcgttggaggcgggcgtg
cggtgcttcaacgtcgagtcgctggccgaattggcgcggctgaaccagatcgccggggaa
tcaggccgaatcgcaccgatttcgctgcgtgtgaaccccgatgtcgatgcgaagactcat
ccgtatatttcgacgggtctgaaggcgaacaagttcggcgtcgccttcgacgatgcgcgt
gcggcgtatcgcacggcgctgggcatgaagcatgtgcgcattgcgggcatcgactgccat
atcggctcgcaaatcaccgagatttccccctaccttgatgccatcgacaaggtactcgag
ttagtcgcgcaagtcgaagcagacggcgcgccaatcgaccatatcgacgtcggcggcggc
ctgggcattcgctacgatgacgaaacgccaccgaacatcggcacattcgtgaaaacaata
ctggaccacttcgatcggcgtggacatggccatcgtgaaatctggttcgagcctggccgt
tcgctagtcggcaatgcgggaatcttgttgacccgcgtcgaatacttaaagccgggagcg
gtcaagcatttcgcgatcgtcgatgcggcgatgaacgacctcgcccgccccgccatgtac
gacgcgtatcacgcgatcgatgcggtcgcgccgcgcgatggccggccgccggtgacctac
gacatcgtcggcccggtatgcgagagtggcgactggttggctcgcgatcggtcactcgcg
ctggagcccggcgacctgcttgcgatacggtcaactggtgcgtacggattcgtgatgagc
tcgaactacaacacccgtccccgggccgccgagttgcttgtggacggcgagcaggtgcac
gtggcccgccgacgcgaaacgctcgcgcagttgatggacggcgaatcggtgctacccgac
tga
DBGET
integrated database retrieval system
