Mycetohabitans rhizoxinica: RBRH_02465
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Entry
RBRH_02465 CDS
T01355
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBRH_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brh03019
]
RBRH_02465
Enzymes [BR:
brh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBRH_02465
Messenger RNA biogenesis [BR:
brh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBRH_02465
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CBW75734
UniProt:
E5AT60
LinkDB
All DBs
Position
complement(2152563..2154089)
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AA seq
508 aa
AA seq
DB search
MSERPHMSDSAITSRSVPTDAGACGATASAAASSSAPAAAPLSFDGFGLAAPILQAIGEQ
GYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPLASTSASPARHPVR
ALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRRGVEILIATPGRLL
DHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQRQTLLFSATFSAEIKKL
ASTYLRDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQLIRQRELKQVIVFCNSKIG
ASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAV
INFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERKQLADIEKLIKRALTIEPLELDR
PARQGRSRYHDDRGDSRRDRHAHVADRVRASMRDAQPADDFFTKPYEPSPSARQTSERAE
SSPSDDKKTPKRPLAALLGGFGMPRRNS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaacgcccacacatgtcagattcagccattacctcacgttccgtcccgactgac
gcgggggcttgcggtgctacggcaagcgccgccgcctccagttccgcgccagctgccgcc
ccgttgtcattcgacgggttcggccttgccgcgccgattcttcaggcgataggcgaacag
ggctacacgaaaccgacgccgattcaggcgcaggcgatccccatcgtgctggccggacgc
gacgtcatgggtgcggcgcagaccggcaccggcaagacggccagcttctcgctaccgatc
atccagcgtttgttgccgctcgccagtaccagtgcgtctcctgcgcgtcacccggtgcgg
gcgttgattctgacgcctacacgcgagcttgcggaccaggtggcggccaatgtgcatgcg
tacgccaagcataccgcgctacgcagcgcggtcgtgttcggcggcgtcgatatgaatccg
caaacggctgaattgcgccgtggggtcgagatcctgatcgcgacgcccggccggctgctc
gatcatgtgcagcaaaagagcacgtcactggcacaggtgcagatgctcgtgctcgacgag
gccgaccggatgctcgacatgggctttttgcccgatttgcagcggatcctgaatctgctg
ccgagccaaaggcagacgttgctgttttctgcgacattctctgccgaaatcaagaagctt
gcgtcgacttacttgcgcgatccggtcacgatcgaggtggcccgtagtaattcgacggcg
tcgaacgtgcggcaaatcgtcttcgaggtggccgagccggacaagcaggcagcggtcgtg
cagctgattcgtcagcgcgagttgaagcaggtgatcgttttttgcaacagcaagatcggt
gcgagccggcttgcaaagcaacttgagcgcgatggcgtggtggccaccgcaatccatggt
gaccgttcgcaaagcgagcggatgcaggcgttggatgcgttcaagcgcggcgagatcgag
gccttggtggcgaccgacgtggccgcgcgcggcctggatatcgcggagttgccggcggtg
atcaatttcgacttgccgttcaatgcggaagattatgtgcaccggatcgggcgcacgggt
cgtgccggagcatccggcgacgcgctgtcgttgtttagtggcaacgagcgtaagcaacta
gcggacatcgaaaaactgatcaagcgggcgttgaccatcgagccgctcgagctggaccgg
ccggcccgtcaaggccgctcgcgttatcatgacgatcgcggcgatagccgtcgcgatcgt
catgcacacgtcgctgaccgggtgcgcgcgtcaatgcgtgacgcccagccggccgacgat
ttcttcacgaagccgtacgagccgtcgccttcggcccgccagacgtcggaacgcgcggaa
tcgagcccatcagacgacaagaagacgccgaagcgaccgctagctgcgctgctgggcggc
ttcggcatgccacgccggaattcgtga
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