Mycetohabitans rhizoxinica: RBRH_02469
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Entry
RBRH_02469 CDS
T01355
Name
(GenBank) DNA polymerase III alpha subunit (EC 2.7.7.7)
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03030
DNA replication
brh03430
Mismatch repair
brh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBRH_02469
03430 Mismatch repair
RBRH_02469
03440 Homologous recombination
RBRH_02469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
brh03032
]
RBRH_02469
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_02469
Enzymes [BR:
brh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBRH_02469
DNA replication proteins [BR:
brh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBRH_02469
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBRH_02469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
CBW75730
UniProt:
E5AT56
LinkDB
All DBs
Position
complement(2146778..2150374)
Genome browser
AA seq
1198 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARAH
GVKPIVGADVWVSNPDDRDKPARLLLLVKDRRGYLNLCELLSRAWLTNQYRGRAEVDCQW
LETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYIELQRMRQPGVE
AYVQQAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANPRRAKRFSTDQY
FFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKT
GLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQDGRDRVIQYV
KSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPASFT
ILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREM
VEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
LFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKVHHPAEFMAA
NMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAPGKRSKTIRYGLGAIK
GSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRAGAFDSLHENRAQLLA
SVPLAMEAAEQASANALQGGLFDMPDGSSGHQHELVDEPAWTEKRKLQEEKAALGFYISG
HLFDAYKDEVRRFVRQKIGELKEGRDKVIAGVITAMRTQMTQRGKMLVAVLDDGTGQCEV
TVFNEIYDANRPIFKEDELLVVQGQARNDSFTGGIRFTVDIVMDLERARRRYADSLLLSV
NGNADPRRLRDLLEPHRLAATPQSEQMPVAAGTSGRARHAGGPPRGPAGEGSNGRRNGDV
RGGPEPGGLRVRIRYQGVGAQCDSTLGDAWRVRPSDDLLNLLRAEFSAGAVEIQYPQR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccacgcttcgtccatctgcgcgttcactccgagttttccattgccgacggc
atcgtgcgtcttgacgacgcggtcgagcgggcagcggaagacgggcaaggtgcgcttgca
ctgaccgatctcgccaacgcgttcggtctggtgcgtttttacaaggcggctcgtgcgcac
ggcgtcaagccgatcgtcggtgccgacgtctgggtctcgaatcccgacgatcgcgacaag
ccggcacggctgctgttgctcgtcaaggaccggcgtggctatctcaacctgtgcgagttg
ctcagccgcgcgtggttgacgaaccagtaccgcggccgggccgaggtagattgccagtgg
ctcgaaacgggtcttgccgaaggcctgctggcgttgtccggtgcgcaacacggtgacatc
ggcatcgcgctggccgcgggcaatgtgcaggcggccacacgccatgcacagcgttgggca
gcgattttcccgaatgcgttttacatcgagctgcagcggatgcggcaaccgggtgtcgaa
gcttatgtgcagcaggcggtggagcttgctgcgcagttgaagctgcccgtagtagcgacg
catccggtgcagttcatgacgccggaggacttcaccgcgcacgaagcgcgtgtgtgtatc
tccgaaggcgacatactcgccaacccgagacgcgcgaagcggttttcgacggaccagtac
tttttcacgcaacagcagatgggcgagctgtttgccgatatcccgtcggcgctggccaac
acagtggaaatcgccaagcgctgcaacctgacgctcgaattgggcaagcccaagctgccg
ttgttcccgacaccggacgggatgtcgctggacgattacctggttcaattgtccaagact
ggactcgagcagcgcctcgagcagctgtttccggacgcgacgcaacgtaacgcgcggcgc
cagacgtatcaagagcggctggcgttcgaatgcgacaccatcatcaagatgggttttccg
gggtacttcctgatcgtcgcggacttcatcaactgggccaagaacaatggggtgccggtg
gggccgggacgggggtcgggcgccggttcgctggtggcattcgcgctcgggatcacggat
ctggatccgttgcgctacaacctgctgttcgagcgattccttaatcccgagcgtgtctcg
atgccggacttcgacatcgacttctgccaggatggccgcgatcgcgtgatccagtatgtg
aagagcaagtatggtgccgatgcggtgtcgcagatcgccacgtttggcacgatggcagca
aaggccgcggtgcgcgatattggccgcgtgctggacttgggctacaacttcaccgatggt
gtcgcgaagctgattccgttcaaacccggcaagcatgtgaccattgccgacgcgatgaag
gaggagccgcagctgcaggagcgattcgacaacgaggacgaggtgcgccagttgctcgaa
ctcgcgcaacgcgtcgaagggttgacgcgcaacgtcggcatgcacgccggtggcgtgctg
attgcgccgggcaagcttactgatttttgtccgctgtacacgcagggtgacgacggtggc
gtcgtcagtcagtacgacaaggacgacgtcgaggccgtcgggctcgtcaagttcgacttt
ctcggattgaccacgctcacgattcttgactgggccgagcggtatatccggcgactggat
ccgtccaagcaggactggtcgctcgcgcaggtgccgctggacgaccccgcgtcgttcaca
atcctgaagaacgccaatacggtggcggtgttccagttggaaagccgcggcatgcaaggc
atgctcaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctggttgcgttgtac
cggccgggcccgatggatctgattccgagcttttgtgcacgtaagcatgggcgggaaatg
gtcgaatatccggatccccgcgtcgaacctatcctgaaggagacctatggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctattcactcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaaaaagcccgaggagatggccaagcatcgcgag
ttgttccgtgaaggagcggccaagaatggcttgagcgcggaaaaggccgacgagatcttc
gacttgatggagaagttcgccggctacggcttcaacaagtcgcacgcggcggcgtacgcg
ctgctcgcgtattacaccgcttggctcaaggtgcatcatccggccgaattcatggcggcc
aatatgtcgctcgcgatggatgacaccgacaaggtgaagatcctttttgaggactgcatc
gcgaaccatctggcggtgctgccgccggacatcaatcagtcggcctaccgctttgagccg
gtggccgatgcgccgggcaagcgctcgaagacgatccgttacggccttggcgcgatcaag
ggtagtgggcagaacgcgatcgaggaaatcctacgggctcgtgagtcgcagccgttcagc
gacctgttcgacttttgcgagcgcgttgatcgccgcattgtgaatcgccgcacgatcgag
gcgctgatccgggccggcgcattcgattcgctgcacgagaaccgggcgcaactactcgcg
tcggtgccgctggcaatggaggcggctgagcaggcgagcgccaatgcgctgcagggcggc
ctattcgacatgcccgatggctcgagcggccatcagcatgagttggtcgacgagccggcg
tggaccgagaagcgcaagctgcaggaggagaaagcggcgcttggcttctatatttccggg
catttgttcgacgcatacaaggacgaagtgcgacgcttcgtgcgccagaaaatcggggag
ttgaaggaagggcgcgacaaggtgatcgccggcgtgattaccgcgatgcgcacgcagatg
acgcaacgcggcaagatgctagtcgcggtgctcgatgatggcactggccagtgcgaggtc
acggtcttcaacgagatctacgacgcgaaccgcccgatcttcaaggaagacgaactgctg
gtcgtgcagggacaggcgcgcaacgacagctttaccggcggcattcgctttaccgtggac
atcgtcatggatctggagcgcgcacgccgccgctatgcggactcgctactgctgtcggtc
aatggcaatgcggatccgaggcggttgcgtgatttgctcgaaccgcaccggctggcggcg
accccgcagtccgaacagatgccggtggctgccggcacgtcgggccgggcgcgccatgcc
ggtggcccaccgcgtggcccggcgggcgaaggcagcaacgggcgtcgcaacggcgacgtg
cgtggcggcccagagccgggcggcttgcgggtcagaatccgctaccagggcgttggcgcg
caatgcgactcgacgctgggcgacgcgtggcgcgtgaggcccagcgatgaccttctcaac
ctgctacgtgccgaattcagcgcgggcgctgtcgagatccagtatccgcagcgctga
DBGET
integrated database retrieval system
