Mycetohabitans rhizoxinica: RBRH_03044
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Entry
RBRH_03044 CDS
T01355
Name
(GenBank) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RBRH_03044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_03044
Enzymes [BR:
brh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RBRH_03044
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RBRH_03044
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CBW76796
UniProt:
E5AUM2
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All DBs
Position
pBRH01:complement(376368..380105)
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AA seq
1245 aa
AA seq
DB search
MMTSDVLELDVFACALDGVTQIEASAGTGKTWNICALYLRLLLEKDLQADQILVVTFTKA
ATAELHERIRARLMQLEQALAHGVALDDPFVTGLIGRLVDGDAPETATQRALKRIRRALH
GFDQAAIHTIHAFCQRALQEAPFAAAMPFALETEADDTTLRFDVAAQFWRERVEPEAART
PGFAHWLVAHGAGPTVLQALLAQRLKKPLAELVWTDPACDETVDTAIDHFGRAKNLWRDE
REQIAQRLADCATQLHQRTHKPSQVQAALAAWERFFVRGDRYAPVPKDALKLTSSSLTAA
TKVQCQPPTHPFFDCADALVAALREEQAMHLRRWFALVREWLRVGPSSVAERKRTARIMS
FDDLLANLHHALHVHPWLADALRERYPAALIDEFQDTDPLQFAIFNQIFAPKGPLFLVGD
PKQAIYSFRAADLHTYLDARAHASARYTLAVNQRSDPALIAACNRLFGANPRAFVLDGLD
YHPVRAAMRSRPAFVDRHDPLGASDGSGAALRVWWLPDHAPLSKRDAERAAAEACAAEIA
RLMRDARAGDATIGTEPLAPANIAVLVQAHRQGMLMKRVLRGWGIGSVELAQASVFASID
AEQFERLLLAIDTPGDLRRLRAALATDWIGLDAAALWAIEQGEPAAAAAGRCEPVPSELD
SASWVERFAGYRLLWHERGFAPMWRIVMRELRIAQRLASADDGERRLTDVNHLAELIQAR
DSEHPGIAPTLCWLSAQRADPDVGDETQLRLESDRDLVQIVTIHKSKGLEYPVVFCPFLT
NGALRAGPSCAALPVAREYHREDGLAVLHFGCDGDEAQRIDRGVRREQAAERARLIYVAL
TRAVYRCYLVAGIYTSGAHASTKEARQSVLNWLVAGGSTHFDAWLDGPPETAALAACWRA
LPGDDEGVVVVPLPTVARRDPLPPPDASHVDVHARVPARRLFDAWRIASFSSLASTRQRP
LPDIDDVLHARPDHDDDVAQADTQAIKADLEPMPTNASPGLRDDDILRFPRGPAAGDCLH
RLMELADLRDPSSWPTAIVRALTEQPVSSRELSTEQLSAMMTRLLRDLAHTPLEADFMLG
ELDPSRRLTELEFVFPVASLDMRRFATMLEEHGIAGMALDDGVLHGYLKGFIDAVIEFRG
RFWIIDWKSNYLGNSPHAYRAAELSAAMDAHAYRLQALIYTIALHRYLRARLPDYDYDTH
FGASLYLFLRGVRPDWPGAGIERFRPTRAAVDAFDALFSTGGGHA
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
ttgatgacctccgacgtgcttgaacttgacgtcttcgcgtgcgcgctcgatggcgtgacg
cagatcgaggcctctgccggcaccggcaagacttggaatatctgtgcgctctatctacgc
ctgttgctcgaaaaggacttgcaagcggaccagatcctagtcgtgacctttacgaaagcg
gctactgcggagctgcacgagcgaatccgggcgcgcctgatgcaactcgagcaggcgctc
gcgcatggcgtcgcgctggacgacccgttcgtgactgggttaatcgggcggctcgtcgat
ggcgacgcgccggaaacggccacgcagcgcgcgctgaagcgaatccggcgcgcgttgcat
ggtttcgatcaggccgcgattcatacgattcatgcgttctgccaacgtgcgttgcaagaa
gcgccgtttgcggctgcgatgccgttcgcgctcgagaccgaagccgacgacaccacgctg
cgcttcgatgtcgccgcgcagttctggcgcgagcgcgtcgaaccggaagcggcacgcacg
ccgggattcgcgcactggctcgttgcgcacggcgccgggcccactgtgctacaggcgttg
ctcgcgcaacgtctgaaaaagccattggccgaacttgtatggaccgacccagcgtgtgat
gagacggtcgacacggcgatcgatcattttggtcgcgccaaaaacctatggcgcgacgag
cgagagcagattgcgcagcggctcgccgactgtgccacccagttgcaccagcgcacgcac
aagccatctcaagtgcaagccgcgctggcggcgtgggagcgattttttgtgcgcggcgat
cgctatgcgccggttccgaaggacgcgttgaagttgacttcgtcgtcgctgactgctgcc
accaaggtccaatgccagccgccgacgcacccgttcttcgactgcgcggacgcgttggtt
gccgcgctccgtgaagagcaagcgatgcatttgcgtcgttggtttgcgttggtgcgcgag
tggctgcgtgtcgggccgtcgagcgttgccgaacgcaagcgtaccgcgcgaatcatgtcg
tttgatgacctgctggccaatttgcatcatgcgctgcatgtgcacccttggctcgccgat
gcgttgcgtgaacgctatcccgcagcgctgatcgatgagttccaggacacggacccgctg
cagttcgcaatctttaaccaaatttttgcaccgaagggtcccttgttcctcgttggcgac
ccgaagcaggcgatctacagttttcgtgccgccgatttgcatacatacttggacgcgcgt
gcccatgccagcgcccgctacacgttggccgtcaatcaacggtccgatcccgcgctgatc
gctgcgtgcaatcggttgttcggtgccaacccgcgcgcttttgtgctcgacgggctcgac
taccacccggtgcgcgccgccatgaggtcgcgaccggcatttgtcgaccggcacgatccg
ctcggcgcaagcgatggcagtggggcggccttgagagtatggtggctgccggaccacgcg
ccgctgagcaagcgggatgccgagcgcgcagccgctgaggcgtgtgcggcagagatcgca
cggctcatgcgcgacgcgcgggcgggcgatgcgacgatcggcaccgagccgctcgctccg
gcgaatatcgccgtgctcgtgcaggcgcatcggcagggtatgttgatgaaacgggtattg
cgcggatggggcattggcagcgtggaacttgcccaagcctcggtgttcgcatcaatcgac
gcggaacaattcgagcgtctcttgttggcgatcgacacgccgggtgacctgcgacgcttg
cgagcggcattggccacagactggatcggtttggacgcggcggcattatgggccatcgag
caaggtgagccagccgctgccgccgctggccgatgcgagccggtgccatcggagctggac
tcagcatcgtgggtggagcggtttgcgggctatcggttgctttggcacgagcgcggcttt
gcgccgatgtggcgcatcgtgatgcgcgaactgcgcattgcgcagcgcctggcgagtgca
gacgacggtgaacgccggctgaccgacgtgaatcacctggccgaactgatccaggctcgc
gacagcgaacatcccggtatcgcgccaacgctatgctggctgagcgcgcagcgtgcggat
cccgacgtcggcgacgagacacaattacggctcgaatcagaccgagatctggtccaaatt
gtgacgatccacaagtccaagggactcgagtaccccgtggtgttctgcccgttcctgacc
aacggtgcattgcgtgccgggccctcgtgcgctgcattgccggtggcgcgcgagtaccat
cgtgaggatggacttgccgtgctgcacttcggctgcgatggtgacgaggcgcagcgcatc
gatcgaggcgtgaggcgcgaacaggcggccgagcgtgcgcgcctgatctatgtcgcgctc
acgcgtgcagtgtatcggtgctatcttgtggcggggatctacacgagcggcgcccatgca
tcgacgaaggaggcgcgtcaaagtgtgctgaactggctcgttgccggcggatcgacacat
ttcgacgcatggttggatggaccacctgagactgccgcgttggcggcgtgctggcgcgcg
ttgccgggcgacgacgagggcgtcgtcgtcgtgccactgccgaccgtggcccgacgtgat
ccgttgcctccacccgatgcatcgcacgtggacgtgcatgcacgcgtgccggcgcgccgt
ctcttcgatgcctggcggatcgcgagtttcagctcgctcgcctcgacgcgacaacggccg
ttaccggatatcgacgatgtgttgcacgcgcgacctgatcacgacgacgatgtcgctcag
gccgatacgcaggcgattaaagcagacctagaaccgatgccaactaatgcgtcgcccggg
ctgcgtgacgacgacattctgcgtttcccccgggggccggccgcgggcgactgtttgcat
cggctgatggagcttgctgatctgcgcgatccttcgagctggccgactgccatcgtgcgg
gctctgaccgagcagccggtgagttcgcgcgagctgagcacggagcagctcagtgcgatg
atgacgcgcctgttgcgggatcttgcgcatactccgctcgaagcggacttcatgctcggc
gagttggatccatcgcgtcggttgaccgagctcgaatttgtcttcccggttgcgtcgctc
gatatgcgccggtttgcgacaatgctggaggagcacggcatcgccggcatggccctcgac
gatggcgtattgcatggttatctgaaggggttcatcgatgccgtgatcgagttccgcggc
cgattctggattatcgactggaaatcgaactatctcggcaactcgccgcacgcgtatcgc
gcggccgagctatcggccgcgatggatgcccatgcatatcggttgcaggcactgatctat
acgattgcgttgcaccgatatctgcgggcgcgcctgccggattacgactatgacacccat
tttggtgcaagcctgtacctattcttgcgaggtgtacggccggattggcctggcgccggc
atcgaacgattcaggccgacgcgtgccgccgtcgatgcgttcgacgccctgttttcaacg
gggggtggccatgcttga
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