Brachybacterium sp. NBEC-018: NLU66_10145
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Entry
NLU66_10145 CDS
T08499
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
brha
Brachybacterium sp. NBEC-018
Pathway
brha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLU66_10145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brha03019
]
NLU66_10145
03400 DNA repair and recombination proteins [BR:
brha03400
]
NLU66_10145
Enzymes [BR:
brha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLU66_10145
Messenger RNA biogenesis [BR:
brha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLU66_10145
DNA repair and recombination proteins [BR:
brha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NLU66_10145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
HEM4
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
UVY82598
LinkDB
All DBs
Position
complement(2243064..2245298)
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AA seq
744 aa
AA seq
DB search
MSAPSSPAVPDDRSDRGDRGERHALHEEALAGLRALTGREDARFHEGQFEAIQALVAEHR
RVLVVQRTGWGKSAVYFLAALLQRHRGAGPALIISPLIALMRDQVAAARRAGVRAEAISS
ANPTEWRDIEEGLAADAIDVLLVSPERLVNPRFREEQLPRLVDRCGLLVIDEAHCISDWG
HDFRPDYRRLRDLVAELGGHVPVLATTATANSRVVADVAEQLGTGEAGAEVLTLRGSLTR
ESLRLGSLSLEDDRQRLDYLVRHLDSFEGSGIIYALTVSAAEDLASLLDRPGRRVRAYTG
RTDPEERAELEQALKDNEVKALAATSALGMGFDKPDLGFVIHLGAPSSPVAYYQQVGRAG
RATDRADVLLLPGREDRAIWEYFATSSMPSQESASQVLTALAESGAPLSTPALESRVDVR
RSALELLLKVLAVDGAVQNVKGGWIATGAPWHYDAERYATVARARREEQQAMLEYERLAG
GPEQCRMVFLARQLDDATAEPCGRCDVCAGPWFPAPDAPAAGADGSEGADARVAALLDRV
GVPVEPRASWPSGLDRLMGPGAPKGRIPEGERAAEGRVIARMSDLGWAVPLRELLRTDED
GRPVDDVVPERIGSRIVEVLKDWDWAQRPAAVVAVPSSTRPRLVGSLAAGIAGIGRLEDL
GALDLAPGAGPLRGGGNSAFRVADLWERFAVGEQLQARLDQLDGAPVLLVDDVIDTRWTM
AVAARLLRRAGSGPVLPLALAQQA
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaccgtcctcccccgccgtccccgacgaccgcagtgatcgcggtgaccgcggt
gaacgtcatgctctgcacgaggaggcgctcgcggggctgagggcgctcaccggccgggag
gacgcccggttccatgaggggcagttcgaggcgatccaggcgctcgtcgcggagcaccgc
cgtgtgctcgtcgtccagcgcaccggctgggggaagtccgccgtgtacttcctcgccgcg
ctgctgcagcgccaccgcggcgccggcccggcgctgatcatctccccactcatcgcgctc
atgcgcgaccaggtcgccgcagcccgccgcgccggggtgcgcgccgaggcgatcagctcc
gcgaaccccaccgagtggcgtgacatcgaggagggtctcgcggccgacgcgatcgacgtg
ctgctggtctcccccgagcgcctggtcaaccctcgtttccgggaggagcagctgccgcgc
ctggtggaccgctgcgggctgctcgtgatcgacgaggcccactgcatctccgactggggg
cacgacttccggcccgactaccgccgcctccgggacctcgtcgccgagctcggcgggcac
gtgccggtcctcgccacgaccgccaccgcgaactcccgcgtggtcgccgacgtcgccgag
cagctcggcaccggcgaggcgggcgcggaggtgctcaccctgcgcggctccctcacccgc
gagtcgctgcggctcggctcgctgagcctggaggacgacaggcagcggctggactacctg
gtgcggcacctggactccttcgagggctccgggatcatctacgcgctgaccgtctccgcc
gcggaggatctcgcctccctgctggaccggccggggcggcgcgtgcgcgcctacaccggg
cgcaccgacccggaggagcgggccgagctcgagcaggcgctcaaggacaacgaggtcaag
gcgctcgccgcgacgagcgcgctggggatgggcttcgacaagcctgacctcggcttcgtg
atccatctcggggcgccctcctcccccgtcgcctactaccagcaggtgggccgcgcgggc
cgcgcgaccgaccgggcggacgtgctcctgctgcccggccgggaggaccgggcgatctgg
gagtacttcgcgacctcctcgatgccctcgcaggagagcgcctcgcaggtgctcaccgcc
ctcgcggagtccggggctccgctgagcaccccggcgctcgagtcgcgggtggacgtgcgc
cgcagcgcgctcgagctgctgctcaaggtgctcgccgtcgacggcgcggtgcagaacgtc
aagggcggctggatcgccaccggggcgccctggcactacgacgccgagcgctacgcgacc
gtggctcgcgcgcgccgggaggagcagcaggccatgctcgagtacgagcgcctcgcgggc
ggtcccgagcagtgccggatggtgttcctcgcccggcagctcgacgacgcgaccgccgag
ccctgcggccgctgcgacgtgtgcgccgggccgtggttccctgcccccgacgccccggcc
gccggtgccgacggctccgagggtgccgatgcgcgcgtcgcggccctgctcgaccgggtc
ggggtgccggtggagccgcgggcgagctggccctcgggcctggaccggctgatggggccc
ggcgctcccaagggacgcatcccggagggcgagcgcgcagcggaggggcgggtcatcgcc
cgcatgtccgacctcggctgggcggtcccgctgcgggagctcctgcgcacggacgaggac
ggccgtccggtcgacgacgtcgtgcccgagcggatcggatcccggatcgtggaggtgctg
aaggactgggactgggcacagcggcccgcggcggtcgtcgccgtcccctcgagcacacgg
ccccggctggtgggctcgctcgccgcggggatcgcagggatcggccggctcgaggacctc
ggcgccctcgacctcgccccgggcgcgggcccgctgcgaggcggcgggaacagcgccttc
cgcgtcgcggacctgtgggagcgcttcgccgtgggcgagcagctgcaggcccggctcgat
cagctcgacggcgcaccggtcctgctggtcgacgacgtgatcgacacccgctggaccatg
gcggtcgcggcgcgcctgctgcgccgtgcgggttccggtcccgtgctgccgctcgcgctc
gcgcagcaggcgtga
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