Buceros rhinoceros silvestris (rhinoceros hornbill): 104490054
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Entry
104490054 CDS
T08612
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104490054 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brhi03019
]
104490054 (SKIV2L2)
03041 Spliceosome [BR:
brhi03041
]
104490054 (SKIV2L2)
03009 Ribosome biogenesis [BR:
brhi03009
]
104490054 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
brhi03016
]
104490054 (SKIV2L2)
Enzymes [BR:
brhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104490054 (SKIV2L2)
Messenger RNA biogenesis [BR:
brhi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104490054 (SKIV2L2)
Spliceosome [BR:
brhi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104490054 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104490054 (SKIV2L2)
Ribosome biogenesis [BR:
brhi03009
]
Eukaryotic type
Pre-60S particles
Helicases
104490054 (SKIV2L2)
Transfer RNA biogenesis [BR:
brhi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104490054 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104490054
NCBI-ProteinID:
XP_010130595
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
GSAAAASGARRTKVGATEGARRPGKRSEEKSSVGLTGKPKREAEVDSTEDAVLGKKSKLE
DVVSEDANLADLMPQVKVQAVETVEGCTHEVALPAHEDFTGLKPRTGKAAKEYPFILDAF
QREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMY
EEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERG
VVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPA
GGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIME
RNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEH
VLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSASK
FDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAF
HLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEGQYNKIAIPNEENV
VIYYKIRQQLAKLGKEIEDYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGVVVNFSKKSNV
KPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLVHLLSAISSVR
LYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKVEAFEHR
MYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLRRLGF
ATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPK
LTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGANFAHIC
KMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
ggttcggccgccgccgcttctggcgccaggaggacgaaagtgggcgccaccgagggtgcc
aggagaccgggaaaacgatcagaggaaaaatcgtcagtaggtttgacagggaagcccaaa
agagaagctgaggtcgatagtactgaagatgctgttttgggaaagaagtccaaactggaa
gatgttgtctccgaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagct
gtggagactgttgaaggttgtacacatgaggttgcgcttccagcacatgaagacttcaca
ggtctgaaaccaagaactggaaaagctgcaaaagaatatccatttattcttgatgctttt
cagagagaagctattctttgtgtagataataaccagtctgtgttagtgtcggctcataca
tcagctggtaaaactgtttgtgcagagtatgcaattgccctggctttgagggaaaaacag
cgtgtgatatttacgagtccaattaaagctttgagtaatcagaagtaccgtgagatgtat
gaagaattccaggatgttggtttgatgactggggatgtcaccattaatcctacagcttct
tgtctggtcatgacaacagagattttgagaagtatgctgtacagaggctctgaggttatg
cgagaagttgcatgggttatttttgatgaaattcactacatgagagactcagaacgtggt
gtggtttgggaagagacaattattttgctccctgacaatgttcattatgtgttcctttct
gcaaccattccaaatgcacgtcagtttgctgaatggatctgccatcttcacaaacagcct
tgccatgtgatttacactgactatcggcccacaccactgcaacattatatattcccagca
ggaggagatggactccatctggttgttgatgaaaatggagatttcagagaagataatttt
aatacagcaatgcaagtgcttagagatgcaggagacttagcaaaaggggaccagaaaggc
aggaaaggaggaacaaaaggtccttcgaacgtttttaagattgtgaagatgatcatggaa
aggaatttccaacctgtgattattttcagcttcagtaagaaagactgtgaagcctatgca
cttcagatgacaaagttagatttcaatacagatgaagaaaaaaagatggttgaagaagtg
ttcaataatgcaattgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcat
gtacttcctcttctgaagcgaggaattggtatccatcatggcggtctgcttcctatctta
aaagaaaccatagagattcttttctctgagggcctaataaaggccttatttgcaacagag
acttttgctatgggaattaatatgccagccaggactgtgttgtttacaagtgccagcaaa
tttgatggaaaagatttccgatggatttcctcaggtgaatacattcaaatgtcaggccgt
gcaggacgccgaggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatg
agtccaacaattggcaagcagcttttgaagggctcagctgatcctttaaacagtgcattc
cacctgacatacaacatggtactgaacttgcttcgcgtagaggaaattaaccctgaatac
atgttagaaaaatcattctatcagttccaacattacagaactattccagaaatagtagaa
agagtgaataatctggaagggcagtacaacaaaatagcaattcccaatgaagaaaatgtg
gtcatatactacaaaattcgacagcagcttgcgaaactgggtaaagagattgaagattac
attcacaaaccaaagtattgcttgccctttctacagcccgggagactggtaaaggtgaag
aatgaagatgatgactttggatggggagttgttgtcaatttctctaagaaatcaaacgtt
aagccaaattctggtgaattggatccattgtatgtagtcgaagtgctactgcactgcagc
aaagagagtctgaaaaattctgctactgaggctgcaaagccagccagacctgatgagaaa
ggagagatgcaggtcgttcctgttttggtacatcttctctcagctatcagcagtgtccga
ctttacataccaaaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctata
caagaagtacagaaacgatttcctgatggagtaccattactagaccctattgatgacatg
ggcatcaaagatcaaggactgaaaaaagtaatccaaaaagtagaggcatttgagcacagg
atgtactcacatcctcttcacaacgatcccaacttggaaactgtatacaaactttgtgaa
aaaaaagcacagattgctatggatattaaagcagcaaagcgagaactgaaaaaagccaga
actgtcttacaaatggatgaactcaaatgccgcaagcgtgttttgagaaggctggggttt
gccacatcttcagatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgct
gatgaactacttctaacagagatgatgttcaatggtctcttcaatgacttatctgcagaa
caggcaactgcactactaagctgttttgtgtttcaagagaattccagtgaaatgccaaaa
ttgacagagcagttggcgggaccgcttcggcaaatgcaggagtgtgcaaaaagaattgcc
aaggtgtcagcagaagcaaaactggaaatagatgaagaaaattacttaaattctttcaga
cccaacctaatggatgttgtctatacatgggcaaacggagccaacttcgctcacatctgc
aaaatgactgatgtctttgaaggtagcataattcgttgtatgagaagactagaagaattg
cttcggcagatgtgtcaggctgcaaaagccattggaaacacagagttggaaaataagttt
gcagaggggattacaaaaatcaagagagatattgtgttcgccgccagcctttacctgtaa
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integrated database retrieval system
