Buceros rhinoceros silvestris (rhinoceros hornbill): 104490373
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Entry
104490373 CDS
T08612
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104490373 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brhi03400
]
104490373 (LIG3)
Enzymes [BR:
brhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104490373 (LIG3)
DNA repair and recombination proteins [BR:
brhi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104490373 (LIG3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
FMP23
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104490373
NCBI-ProteinID:
XP_010130948
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MPTGSRTLSQAARTLGRGTGLLSFHSQVSLPRLYLCCVGLPGASPSYWYQLLLRCVSPWS
AGGNQGGGAGTFHFSLRLSPWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDGEKEL
INKHISEANSKAGSTPKKKVIVQAKLTATGQLTTKDPLALVNPSPKKFSGFTAKPKNSED
VAANSSHKSSLSAKQCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNRQEAEKEPGLKRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDTKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVVAGEEDESPAGSSGENEGNSRSSTPHSAVKTPPSKSPAKAQKPEESKAVIGSPQKSEE
KRGEKRKASEMEDNGKKPLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVTEFDTASA
THVIGDIDENPGAKRVSPNWIWECIRKRRLVAPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaggcagcaggacactatcacaggctgcccggacactcggcagaggcacagga
ctcctctccttccatagccaggtctccttgccaagactctacctgtgctgtgttggcctc
cctggcgccagccccagttactggtaccagctgctgttacggtgtgtatctccgtggtct
gcaggtggaaaccagggtggtggtgctgggactttccatttctccttgcgtttgagccct
tggcttcgccaagcctgcactgctgcagaggacatggcagagcagcggtactgcgtggac
tatgccaagcgtggcacggcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattgggaagatagttcccaatcctttcacggagtctggtggggacatgaaggag
tggtaccacgtgaagtgcatgtttgagaagctggacaaggcccgggctaccaccaagaag
attgaagacatcaccgacttggaaggatgggaagagctacaagacggggagaaagaatta
atcaacaagcacatctcagaagctaattccaaggctggaagtacaccgaagaaaaaagtg
atagtccaagcgaagctcactgccacaggacagttaactacaaaagatccgttagctctc
gtcaatccatcaccaaagaagttctctggcttcacagccaagccaaagaattcagaagac
gtggctgcaaactcctcccacaagtcgagcctgtctgcaaagcagtgtgacccgaagcac
aaggactgcctgctgcgggagttccggaagctctgcgccatggtggctgagaagcccagc
tacaatgtgaaaacgcagatcatccaggatttcctgaagaagggctctgggggagatggc
tttcacggggacgtctacctgaccattaagctgctgttaccaggagtcattaaaattgtt
tacaacctgaacgacaagcagattgtcaagctcttcagtaggatttttaactgcagccaa
gaagaaatggtgcgggacctggagcagggagatgtttcggagaccatccgcctcttcttt
gaacagagcaagtcttgtcctccagcagccaaaagtctcctgaccatccaggaggtggat
gaattcctaatccagctgtcaaagcttactaaggaagacgaccagcaaagtgtgctgcag
cacatcactcgcagatgtacaggcaacgacctgaaatgcatcatcaggctaattaagcat
gacctgaaaatgaacgctggagcaaagcacgtgctggatgctctggatcccaacgcttac
gaggcgttcaaagcatcgcgcaacctccaggacgtggtggagcgagtcttgaagaaccgg
caggaggctgagaaggagccgggcctgaagcgggcactcagcgtgcaggcctctctgatg
accccggtgcagcccatgctggctgaagcctgcaagtcgatcgagtacgccatgaagaag
tgtcccaatggcatgtatgcagagatcaaatacgatggcgagcgggtgcaggtccataaa
aacggagaccacttcagctacttcagtaggagcctcaaacccgtcctcccacacaaagtg
gcccattttaaggacttcatcccccaggcttttcctggtgggcaaagtatgatcctggat
tcagaagttcttctgattgacaacaaaactggcaaaccgcttccttttgggactcttggt
gtgcacaagaaagctgctttccaagatgccaacgtgtgcttgttcgtgttcgactgcatc
tacttcaacgacatcagcctgatggacaggcccctgtgtgaacggcgtaagttcctccac
gataacatggttgaaatccccaaccggatcctcttctcggagatgaagcacgtcacgaaa
gcttcggatctggcggatatgatcacccgagtcatccgcgagggcctggaagggctggtg
ttgaaagataccaagggcaattatgaaccaggaaagcggcactggctgaaggtgaagaag
gactacctgaacgagggggcgatggcagacaccgctgacctggtggtgctgggagccttc
tatggacagggcagtaaaggtgggatgatgtccatcttcctcatgggctgctacgatccc
aagagcgagaagtggtgcaccgtgaccaagtgttccggcggccatgatgatgccaccttg
gcgcgcctgcaaacggagctggatatggtgaagatcagcaaggatcccagtaaaattcca
aggtggctaaaaattaacaagatctactaccccgacttcatcgtcccagacccaaagaaa
gcccccgtgtgggagatcaccggggccgagttctccaaagccgaagcccacaccgcagat
gggatctccattcgcttccctcgctgcacccgcatccgcgacgacaaagactggaagacg
gccaccaacctccagcagctgaaggagctgtaccagctctccaaagagaaggctgatttc
agcgttgttgctggggaggaagacgagtccccggctggcagcagtggagagaatgagggg
aattccaggtcttccacaccacacagcgctgtcaaaactcccccgagcaagtcacctgca
aaggcccagaagccagaagaaagcaaagcagtcattggatcccctcaaaaatccgaggag
aaacgaggggagaagcgaaaagcatccgagatggaagacaacggaaaaaagccgctgctg
gacattttcactggggtcaagctgtacctctcgccctccgtgaaggactttgacaaaatc
cggcggtacttcatagcgtacgatggggatctcgtgacagagtttgacacggcctctgcg
acacacgttataggggacattgatgagaatcctggtgctaagcgtgtgtctcccaactgg
atctgggaatgcatccggaaacggagactggtagccccgtgctag
DBGET
integrated database retrieval system
