Buceros rhinoceros silvestris (rhinoceros hornbill): 104490841
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Entry
104490841 CDS
T08612
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brhi03021
]
104490841 (SCAF8)
03041 Spliceosome [BR:
brhi03041
]
104490841 (SCAF8)
Transcription machinery [BR:
brhi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104490841 (SCAF8)
Spliceosome [BR:
brhi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104490841 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104490841
NCBI-ProteinID:
XP_010131486
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGXPPPVVTP
VLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEESEQNEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEENQEVNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEE
EIFEQEEKKSAVHSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENIQTTQSATVDKTT
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGT
ITSNLATPTLSAGSVFNPLPINKPESDEKGSHLTDLQISSNENNRTGQSDVSSSSGLVGG
VQPPSVSSSSGLPGEGQPPSVSSSSGLAAAVQPPSVSSSSGLVGGVQPPAVSSSSGLAGG
VQLPTVSSSSSLVGGVQPTSISSSSGLMAGVQPPNVSSTSGLLAGVQPPIVSSSPGVLTG
MQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNVSSSSGLMGVPPPNISSSSGLMAMQH
PVAVQNMPHLNISSQRMPGMPLIDIRPGLMPHSPGPRFPLMQPAMPPQRSIPPPAILDPS
LHPPPRGPFPPGDIFNQTERPFGTPGRQNIDSISNPEKRLPLGGDNIQQEGDRDYRFPPV
ENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVDGREHFARPHADIRENFGRPGIDNLG
RREHFGFNSDKHWGQRGDYDEREHHAFPVYGGPKGFHEERERFRHVNYRFDSRSGPNWNR
GFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYF
DGATSQHKADSMPQVNGENTETESQPPTAQVQDDPELYEKMTSSVEINKEKSDTEADIES
EPVVESTETEGT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgtacag
agtgttgagaaattcattcaaaagtgcaaaccggaatacaaggtacctggtctgtatgtc
attgactccattgtaagacagtcccggcatcagtttgggcaagaaaaggatgtatttgca
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggagat
gacaagagtaaaattgttagagttctgaatttatggcagaagaataatgtattcaagagt
gaaattattcagcctctcttggatatggcagcaggnnntcctcctccagttgtgacccct
gtcttgcccagcactacagctgctatgagcaacaatacgccaggaacacctgtgactcca
gttactccagccaatgtggtgcagagtttacctgatccgtgggtatctcagattgctaat
acagacacccttgctgctgttgcacagattttacagagtcctcaagggcaacagcttcag
cagttgatacagacactgcagatacagcagcagaaacctcaaccttcactgctccaagcc
ctggatgctggtcttgtcgttcagttacaagccctcacagcacaacttacagctgcagct
gctgctgctaacacgctcaatccactggagcagagtgtctcttttaataagaagctgatg
gacaggtttgactttggggaagaatctgaacaaaatgaagagcctaaaaaggaaactccc
acatcccaactgcctctagtaccagaatctgtgaacaactcactttttcatcaactagct
gaacagctacagcaacaaaatttagaacatctcagacaacagcttctagagcagcagcag
cctcaaaaggcaagccctgaggagaatcaagaagtaaattttggttcagagcactctgca
tcaccatcacaagggagtagtcagcagcagtttttagaagtggaaacaaatgtagatgat
tcaatggatattcaacaacaggacatggatatagatgaaggacaggatgttgctgaagaa
gagatttttgaacaagaagaaaagaaatcagctgttcattcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaaaagaaggtctagatcacggtctggttctcgtaag
cgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaagagaaagtcgtctcgt
tcatattccagtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggattg
cctcctatacggtcaaaaacactaagtgtttgcagtactactctttgggttggtcaagta
gacaagaaggctacacagcaagatttaactaacttgtttgaagaatttggacaaatagag
tcaattaatatgattcccccaaggggctgtgcttatgtctgtatggttcatagacaagat
gcatatcgtgctcttcagaaacttagttctgggtcttacaaaattgggtctaaaattatt
aagattgcctgggctttgaataaaggtgtgaaaacagaatacaagcagttctgggatgtg
gatctgggagtttcatatattccttgggagaaagtaaaattggatgatttggagggcttt
gctgaaggtggcatgattgaccaggaaacagtaaatacagaatgggaaacagccagaagc
tcagaagctgctaaagaaaatattcaaactacgcagagtgctacagttgacaagactaca
gttattacaacgcagacagaagcttacacacaaccagttactatgctgcagattccagta
gctcctgctgtgcctgctgttagcttggttccacctgcatttcctgtcacaatgtctgtc
cctcctcctggttacagtgcaattcctcctccacccttcctgcgagccagtttcaaccct
tcacagccacctccaggttatatgcctcccccagtcccacccgtggtcccaccacctgtt
gtcccgccacctgttgtcccaccagttgttccaacacccttagtacagcctccattacca
attgcccaagagacgatgaaggatgttccttttactagccttgttctaccagttggcaca
attacgagcaatctggctactccaactttatctgctggaagtgtttttaatcctctgcca
atcaacaaacccgaatcagatgaaaagggatcacatcttacagaccttcagatttcttct
aatgaaaacaatagaactgggcaaagtgatgtctcgagtagctctggacttgttggagga
gtgcagccacccagtgtctcaagcagttctgggcttcctggagaagggcaaccacccagt
gtctcaagtagctctggacttgcagcggctgtacagccacccagtgtttcaagcagctct
ggacttgttggaggagtgcaaccaccagctgtttcaagcagttctggtcttgcaggagga
gtgcagctgcctactgtctccagtagctcttctcttgttggcggagttcagccaaccagc
atctcaagtagctctggacttatggctggagtgcaaccaccaaatgtctcgagtacctca
gggcttctagctggagtgcagccacccattgtctcaagcagccctggtgttctgacagga
atgcagccacccagtgtctcaagcagctcaggagttctggcaggagtacagccaccaagt
gtctcaagcaactctgggcttcttataatgccaccacccaacgtttcaagcagttctgga
cttatgggagtgccaccaccaaatatttcaagtagttctggacttatggcaatgcagcat
ccagttgcagttcaaaacatgcctcatttaaatattagtagtcagaggatgccaggaatg
cctctcatagatatccggcccggcctaatgccccattcacctggaccaaggtttccatta
atgcagccagctatgccaccgcagcgtagtattcctcctccagcaatccttgatccatct
cttcacccaccacctcgaggtcctttccctccaggagatatttttaatcaaacagaaaga
ccttttggaacaccaggaagacaaaatattgatagcatttctaatccagagaaaagactg
ccacttggaggagataacattcaacaggaaggagacagagattatcgctttcctccagtg
gaaaaccgagataatcttaacagaccatctccagtggatgtcagagattccgttggacga
ccaccagttgatcccagagagggtataggaaggcctccagtagatggaagagaacatttt
gcaagacctcatgcagacataagagaaaattttggaagaccaggtatagataatcttggt
cgaagagagcatttcggtttcaattcagacaaacactggggacagagaggagattatgat
gaaagagagcaccatgcgttccctgtttatggtggccctaaaggcttccatgaagagaga
gagaggtttcggcatgtaaactataggtttgatagtagaagtggtcccaattggaacaga
ggatttgaacaagatgctcacagagattttgatgaccgcagaagaccctgggaaagacag
agggatagggatgacagagattttaatttttgcagagaaattaatggaaacaggtttgga
agagacagaatgtcaaacaactggatccctcctccacatccacgggtttttgaatatttt
gatggggccacttcccaacacaaagctgatagtatgccccaggtaaatggtgaaaataca
gagacagaaagtcagccaccgactgcacaggtgcaggacgatccagaactttatgaaaaa
atgacatcttccgttgagataaacaaagagaagagtgacacagaagctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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