Buceros rhinoceros silvestris (rhinoceros hornbill): 104491974
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Entry
104491974 CDS
T08612
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104491974 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brhi03400
]
104491974 (MSH6)
DNA repair and recombination proteins [BR:
brhi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104491974 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Motif
Other DBs
NCBI-GeneID:
104491974
NCBI-ProteinID:
XP_010132771
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All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MEGYPWWPCLVYNHPTEKTIVRGKGKSARVHVQFFDDSPTRGWVSIKYLRPYKGSSDGEA
LRGGMFYSIKPEIKRAMVLADDAMSKDKAKRLELAVCSEPSDAEEEDGEEMEQMSESASG
NSDDCNSEEGDCNSEEDVKSKKRVTSRESAVKAKRRRVLDSDSDHYDSDAEFKPDAKELA
SSEETSSGVDENECTDIETDAESVEESPVKVPSKRKRREINKPAKRSSLENEHSETPKRA
VTVSLEAKSKLTSFAAPESFESQANACGGGTSGFAAWEHEKLDWLQEGKKKDAHRKRQGD
PDYDPRTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELG
LIFMKGSWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRCKSMAHPTRFDKV
VRREICRIITKGTQTYSILDCDPSENHNKYLLCVKEKEDSAGQRVYGVCFVDTSVGKFYV
GQFSDDRHRSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLIAGSQFWNA
SKTLKVLLEEEYFKEKQNSENGCFLPSVIKSLTSESDSLGLTPGENGELALSALGGCVFY
LKKCLIDQELLSLANFEEYVPVDTDTAKTMSSSSFFARTDQRMVLDGVTLMNLEVLQNGT
NGTTEGTLLERIDSCCTPFGKRLLKRWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSE
HLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNE
IVDVMEEIAGDFKSKVLKQLVTRKAKNPEGRFPDLSAELKRWDTAFDHNQARKTGVITPK
AGFDPDYDKALEDIKAVEEDLHKYLDKQRKLLGLKSVLYWGAGKNRFQMEIPESAVSRNL
PEEYELKSTRKGYKRYWTKEIEKMLAALVNAEDRRDAALKDCMRRLFYNFDQNGEDWQTA
VECIAVLDVLMSLANYSQDGDGPLCRPVILLPEDSAPPFLELRNSRHPCITKTFFGDDFI
PNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAQVCRLTPT
DRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIASA
VVKELAEKIRCRTLFSTHYHSLVEDYSHNPAVRLGHMACMVENESEDPSQETITFLYKFT
EGACPKSYGFNAARLANIPEEVIQKGHRKAKQFEKTTISLRIFRYLCLLVDGATSDANAV
QKLTAMISHL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccctgtctcgtatacaaccatccgactgaaaaaacaata
gtcagaggaaaagggaaatccgctcgtgtccacgtacagttttttgatgacagccctacg
aggggctgggtcagtataaaatatctgaggccgtataaaggttcatccgacggggaggcg
ctgaggggaggtatgttttacagtataaagcctgaaattaaaagagcaatggtgctggcg
gatgatgcaatgagcaaagataaagctaagcggcttgaactggcagtatgcagtgaacct
tcagacgcagaggaggaggacggggaggaaatggagcagatgagtgaaagtgcatcaggc
aacagtgatgactgcaacagtgaggagggtgactgcaacagtgaggaggatgtgaagagt
aagaagcgagtaacgagcagggaaagtgctgtaaaagccaaaagaagaagagtgttggat
tctgacagtgatcactatgactctgatgcagagttcaaacctgatgcgaaggaactggca
agcagtgaggaaactagtagtggggtggatgaaaatgaatgtactgacatagagacggac
gcagagagtgttgaagaaagtcctgtaaaagtcccttctaaacgaaagaggagagagata
aacaagcctgctaaaaggagtagcctcgaaaatgagcattccgaaacgcccaaaagagca
gtaacagtttctttggaagccaagtctaagctgacatcatttgctgcacctgaaagtttt
gaatctcaagcaaatgcttgtggcggaggcacgagtggctttgcagcatgggaacatgag
aagcttgattggctgcaggaagggaaaaagaaagatgcccacaggaagcggcagggtgac
cctgattatgacccacgtactctgtacgtacccgaggactatctcaacaagtgtacacca
ggaatgcggaggtggtggcagctgaaaagtcagaactttgatgctgtgattttctacaaa
gttgggaaattctatgagttgtatcatatggatgcagtcactggcgttaatgagttgggc
ctgatcttcatgaaaggttcttgggcccactcgggctttccggaaactgcctttggcagg
ttctctgatgttctagtgcagaagggctacaaggtggcccgtgtcgagcaaacagaaact
cctgaaatgatggaaacgcgctgcaagtcgatggcccacccaacaagatttgacaaggtt
gtacgccgagaaatatgcagaatcatcaccaaaggaactcagacgtacagcattctggac
tgtgatccctccgagaaccataacaaataccttctgtgtgttaaggaaaaagaagactcc
gccggacaacgtgtttatggggtctgctttgtcgacacctcggtggggaagttttatgta
ggccagttctcagatgaccggcaccgttcgaggtttaggactttggtagcgcattacact
cctgtgcaggtactgtacgagaaggggaacctgtctgtggacacacagaagatactgaag
ggctcgcttgtttcttgcattcaggaagggctgatcgccggttcccagttctggaatgca
tctaaaacactaaaagtccttcttgaggaagaatatttcaaggagaaacagaactctgaa
aatggatgttttctgccctctgtaatcaaatctctgacttcagagagtgactcgctggga
ttaactcctggtgaaaatggtgaattggctttgtcagctcttggggggtgtgtcttctat
ctcaagaagtgtctgattgatcaggagctgttatcgctggcaaactttgaggagtatgtc
cctgtggacactgatactgcaaaaactatgagttcaagtagtttctttgcccgaactgac
cagcggatggtgttggatggagtcacccttatgaacttggaagtcctgcagaacggaacc
aatggaaccacagaaggcacgttgttggaaaggattgattcttgttgtacaccgtttggg
aagcgactcctgaaacggtggctctgcgctccgctttgtaatcctaaatccatcaacgat
cgcttagatgctgttgaggaccttctggcagtgcccgataaaatgtctgaagttagtgag
cacctgaagaaacttcctgaccttgaaaggctgctcagcaaaattcacagtattggatcg
ccactgaaaagtcagaaccatcctgacagcagagccatcttttatgaagaaatcaaatac
agcaaaaaaaaaattgctgactttttgtctgccctggaggggtttaaagtaatgaatgaa
attgtcgatgtcatggaagaaattgccggtgacttcaaatctaaagtcctgaagcagcta
gtcacccgcaaagccaaaaatccagagggccgcttcccagacttgagtgcagagcttaaa
agatgggatactgctttcgaccataaccaggctcggaagacaggagtgattactccaaag
gcgggttttgaccccgattacgataaggcgctagaggatattaaagctgttgaggaagac
cttcacaagtacctggataagcaacgcaaattgctcggattgaaatccgtgctgtattgg
ggggcaggcaaaaaccgattccaaatggaaataccggagagtgcagtatcccgtaatttg
cctgaggaatacgagctgaagtcaaccaggaagggatataagcgttactggaccaaggag
atcgagaagatgctggctgcactggttaacgctgaagaccgcagagacgcagcactaaaa
gactgtatgaggcgtttgttttacaacttcgatcaaaacggcgaggactggcagacagcc
gtggagtgcatcgcggtgctggatgtcttgatgtcccttgctaactacagtcaagacggt
gatggaccgctgtgccgacccgtaattctgctgcctgaggatagtgctcctcccttcttg
gaacttagaaattcccgccatccatgcattacaaaaactttctttggggatgattttatt
cctaatgacatcgtgataggcagcaaagatgaagatggtggtagcgaagcctcctgtgtg
ttagtaactggcccaaacatgggtggcaaatctacgctcatgagacaggctggtctcctg
gttataatggctcaactgggatgctacgtacccgcccaagtctgcaggctcacgccaact
gacagggtatttacaaggctcggcgcctcagacagaattatgtcaggtgaaagtaccttc
tttgttgaattgagcgagacttccagcattctccagcatgcaacagagcactcccttgtt
cttatggatgaactgggcagaggcacagctacttttgacggaacggctatagcgagcgca
gtggtgaaagaacttgcggagaaaatccggtgtcggactctgttctccacgcactaccat
tctctggtagaggattactcgcacaacccggctgtgcgcctcggccacatggcatgtatg
gttgaaaatgagagtgaagatccaagccaggaaacaattacgttcctgtataagttcact
gaaggagcatgtccaaagagctatggcttcaatgcagcaagacttgctaatattccagag
gaagttattcagaaggggcacagaaaagcaaaacagtttgaaaaaacgaccatttcactg
agaatatttcggtatctgtgcctgctggtggatggtgcaacaagtgatgcaaatgctgtt
cagaaacttaccgctatgatcagtcacctttaa
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