Buceros rhinoceros silvestris (rhinoceros hornbill): 104500346
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Entry
104500346 CDS
T08612
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brhi03021
]
104500346 (SETX)
Enzymes [BR:
brhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104500346 (SETX)
5.6.2.5 RNA 5'-3' helicase
104500346 (SETX)
Transcription machinery [BR:
brhi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104500346 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
ResIII
RNA_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104500346
NCBI-ProteinID:
XP_010142280
LinkDB
All DBs
Position
Unknown
AA seq
2805 aa
AA seq
DB search
MSTCRWCTPGAFDTTEFLKNYASKRLSPEDLEGSNDDLCYCLECVVEYHKAREELPGLHE
VLWELETSRLAAHIETSMQEEAGEDDELFVVDENGETQLSGYVGPEFENNLRVPLLEILK
YPYLLLQKRVSELCVEVLCRMEQSHRSFQVFEKYPGIYLFLVHPNETIRRWAILTARNLG
KVDRDDYYDLQDVLTCLFKVIELGLFENPDIYSSSVIEKGKLILLPSHLYDAANYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKGGTDDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQAIINSVSYNNEIKNIRSRFQRTKSEPKSDDDEDMVTCSQIVYN
YNTEKPQKDTGWKTAICPDYCPNLYEDMQTLTNLLQSDIGRDMRVHDSTFMWFIPFVQSL
MDLKDLGVAYIVEVIHYLCLEIKDILNERIQQCDKISEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCVKLPAIAFTQRNEKVSGHRARGSSVFLQASNSVQHACVQLIRSLLR
EGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNVQETQELQMCLKQVIRSMKDRALNNSV
PVGNNANSPALPTVAIKQKKSPRGDGREMSVHGRDDFCPPFAVISKEGGDEDCLENPSRR
RKSAWEEECRDASTSSGSQKSIEGLLVNIKKELDDSPAQEYVCPQSSSATKACGEVQENG
TSGLVADKCIMNDQCFNAGVQGLDCRRGIKLENEHEAGAVTPVPLAAQTRMGSPEHVCSL
DVKKSSTSPSSSSKFKVDAKILMNLKDKIQKIEWLSEVSWPAKPRDLKNCSLATSASKAE
EEQPMFCTGYPCESQDRHKYQEVNAVRENEISVETSSSGSCESAQEESVNSAFQSRLVPT
KQVSKNPPLDCSSSPKNEPGLQEHEGDNILLSEISDTLLKKASIEEKPGSLLKSVFKADP
DMQTSDKEQPDLIDLVQYDCKGQISKTCFMDKTSANGLVPSSSESRRDISSPAAQTRPLS
VKCESSDRLFEFSEYFKRENNSVVKKEEDFAKVVSEDNILTDSQVDRELSKLSLAAYAKS
VNFPFDSSQDSSVHHNVCDIKRKVKGAVRSCSDVQSTKSLCDANCQGNEVIVISDSSDEE
KDAADREETKKVNENVCPEKQPSPSSHVPESEPPSSPSSLEGCESQYFEFESGGDIFSVW
QDTQAYSMEATQDYQQGHVSTPVDSSNSEGSLKDRKNERGYISDEAMEEEVSLIEKQIEN
SGSYTKVVTNSVLQESSSKGNAKDHLENFTDKDTVAKDFTVASKLTEPRASTSNTSLASK
LALKKNSASQRNNVEKSKVARTIQRSPKISPVLKAAQNKKLLQTTSRNSQPGMSMPAVVP
PRKVRQRPAPASTVEKLGLKKAPRKAFELSQRSLESIVQLRSHGKAAGRVGVPQKRKTKE
TAAQKLSIKHNKKFLACQDRQYLRQTRPQKNVRAKNPAGSSESRNKVSKVDAKSLKQKPE
SLELATLEETIENEREKKREEAVCPSASERKFRSLAVEEELRVSKMPHSLDLNRKSEGNS
MKVPPVPMGSSLSSAALEGDKDEPSGKGCIVQPECEKTTSEENGCKPNKDSEDDDDVFLT
QRDPVDMDLCSQEESVQDTAIASKIPEELDIAESLQQNGSCTVVKCKYTGCVEDVETPGE
CCGKHSATSSEADHLFAKPSLPPPKTRKPSTTKIFSSASSSRSAAFTKDLEDGKKLPPAS
KSKVNAAKQAVVRLPRARAVPTGNQTSSSPCFTNVPQPHVYDNVLQPLNRQNNNVSCVSR
RSARQVCSSFLGTRQRDDNIFVNEVLKWTYEMFATSSQFGPPCHLQSVVASVPVQFQNYN
EYFNTFFPLMMLNAFETLAQEWVENQRVRERNFCLLNVRRFCADSNTAEFEAHFQETDLA
RQLHPKEDDLVFLVVQKKKDTFGGESEMDNHTAYHVGLVTRFCRAAGRSTRQKDQPAVYQ
VAVKTQLNLSFFINKQVKCVVVGSLVTTHRSFKGLLLLSRSPLAKPIINPSHSDFCPRDV
RVASESATLGMKEYNEDQKRAIDTAYAMVKQHPALPKICLIHGPPGTGKSRTIVGLLSRV
LRENTRNEKTTRRPNSKVKPNRFLVCAPSNAAVDEVMKKIIIAFKEKCQNRQEPLGNCGD
IKLVRLGAEKAINSEVRRFSLDNQVEHRMKRKTTDVEQNLQKQKEAIDQRLDELTRQRAM
NKCGKRESQMIDGEFNRLSKERERVAYDLKQVRVYSQKIQADIILESDIICCTLSASGGG
LLESTFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTVKSVTAQ
DCGYGQSLMARLHQHLEEQVRLEVIRSLPVVQLTVQYRMHPDICLFPSNYVYCRMLKTDK
ATEENRCSSEWPFQPYLIFDVGDGREERDHDSFSNPQEVKLVMELIRTIKEKRKDLGLRH
IGIITPYSAQKKKIQDQLDRVYRNNSPGEVDTVDAFQGREKDCVIVTCVRANIMRGSIGF
LASLQRLNVTITRAKFSLFILGRLETLMENRDWNELIQDAHKRGAIIKTSEENYRKDAVK
ILKLRPTVRPRTQAGTNIPPLLQAVSSSSRRGELATPREVSTPRGLAAGAGHAVPQGSQG
PPQMQGAQAADTRKGSAFVPVEPAVLPAAQEKPRDPRLASMASRTEVKGKEQALKDSNRP
AQSKPGSVSQQGLDVSSAASGPISRTETCMRPLQMVRQCDMPSTSPYTAQHEGGLRAAVL
RSSSRAHSEGGQGDSGVLNRDCRVSTRRTPESTESSSAKRRKTSQ
NT seq
8418 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgatggtgtacacctggtgcttttgacaccactgagttcctgaagaac
tatgcttccaaacggttgtccccggaagatcttgaaggatccaacgatgatctctgttac
tgcctggagtgtgtggttgagtaccacaaagcaagggaagaattgccggggctgcatgag
gttttgtgggaattggaaacctcccgacttgctgcccacattgagacatccatgcaagaa
gaagctggagaagacgatgagttgtttgtagtggatgagaatggagagacacagctgtcg
ggttacgtgggcccggaatttgagaacaacctgcgagtgccccttctagaaatactgaaa
tacccctatctgctgctgcagaagagagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagccacaggtcctttcaggtctttgagaaatacccaggaatttatctcttt
ttggttcacccaaacgaaacaattcgtcgatgggccatcctgacagcaaggaatttaggg
aaggttgacagggatgattactatgacttacaggatgtgctgacttgcttgttcaaagtt
attgagttggggctttttgagaatccagatatttacagctcttcagtgattgaaaagggt
aaactcatccttctgccatctcatttatacgatgctgccaactacaagaactattggcta
gggatttgtatgttgctcacagtgctggaagaacaagctatggactccttgctgctgggc
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaaggaggaact
gatgattccactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
ctcggatctaaagtgtggggtcagcttattgatcctgtccaagcctttcaagccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtaggtttcagaggacaaaa
tctgaaccgaagtcagacgacgatgaagacatggttacttgcagtcagattgtgtataat
tataacacagaaaagcctcagaaggatactggctggaagactgccatttgcccagactac
tgccccaacctctatgaagatatgcaaacactgactaacttgcttcagtccgatattggc
agagatatgcgagtccatgacagcacgtttatgtggttcatcccttttgttcagtcgctt
atggatctcaaggacttgggtgtggcatatatagtagaggtcattcactacctctgcttg
gaaatcaaagatattctcaatgaaagaatccagcagtgtgacaaaatttctgaatttttc
ctcttgatcttggtgtcaattattgaactacacagaaataagaagtgcctgcatttgctg
tggattagctcccaagaatgggtggaagcagtggtgaggtgtgtgaagcttccagctata
gcatttacacagcgcaacgaaaaagtctctgggcaccgtgcaagaggatcctctgtattt
ttacaagcttctaactctgtgcagcacgcctgtgtgcagctgatacgtagccttcttaga
gaaggctatcaaattgggcagcatgcactctgcaagcaatacctagacaaactcaatctt
cttctgcgaggaaatctgtctttaggttggcagctgaacgtccaggaaacgcaggaatta
caaatgtgtttaaagcaagtaatcaggagtatgaaggacagagcattgaataattctgta
cctgtaggaaacaatgcaaactccccagctctgcctactgttgctataaagcaaaagaag
agtccacgtggggatgggcgtgagatgagtgtacatggcagagatgacttttgcccaccg
tttgctgtcatatcaaaggaaggtggagatgaagattgtctagagaacccttcccgtaga
agaaagagtgcctgggaagaggaatgtagggatgcatctacaagttcaggatctcagaaa
tccatagaaggcctcctggtgaatattaaaaaggaacttgatgactcaccagctcaggag
tatgtctgcccacagagttcctcggcaacaaaagcatgtggggaagttcaggaaaacggg
accagtggtcttgtggcagacaaatgcattatgaatgatcagtgctttaatgcaggtgtc
cagggtttagactgcagaagaggcataaagttggaaaatgaacatgaagcaggagccgta
acacctgtgccactggctgctcaaactcgtatgggttctccagaacatgtttgcagcttg
gatgtgaagaagagcagtacatctccaagttcctcttcaaagtttaaagtagatgcaaaa
atactcatgaatttgaaagacaagatacagaaaattgaatggctctcagaagtatcatgg
ccagcaaagccacgtgacttgaaaaactgcagtttagcaacaagtgcttcaaaagcagag
gaagagcaacctatgttttgcacaggctacccatgtgaaagccaggatcgtcataaatac
caggaagtgaatgctgtgcgtgaaaatgaaatctctgttgaaacttcgtcttcagggagt
tgtgaaagtgcacaggaggaaagtgtcaacagtgcttttcaatccagattggtccccact
aaacaagtatcaaaaaacccacccctagattgctctagctcccctaaaaatgaacctggt
ctgcaggaacatgaaggtgacaatattttgctttcagagattagtgacaccttactgaaa
aaagcatccattgaagaaaaaccaggttcattgttgaagtctgtgtttaaggcagaccct
gacatgcaaacttcagacaaggaacagcctgatttaattgacttggttcaatatgactgt
aaaggtcaaatttcaaagacgtgttttatggataaaacttcagcaaatggtctcgttccg
tctagttctgaaagccggagggatatatccagccctgctgctcagacaaggccactgtca
gtgaagtgtgaatcaagtgacaggttgtttgaattttcagaatatttcaagagagaaaac
aattcagtggtgaagaaagaggaggattttgcgaaggtggtttctgaagataatatttta
acagactcacaggttgatagagaactcagtaaattatctttagctgcatatgccaaaagt
gtcaatttcccctttgattcaagccaagacagttcagtacatcacaacgtgtgtgatatt
aagaggaaggtgaaaggtgcagtaagatcttgcagtgatgtccagagtaccaagtctctc
tgcgatgcaaattgccagggcaatgaagtcattgtaatttcagactcttctgatgaagaa
aaagatgcggctgacagggaggaaacaaaaaaagtgaatgaaaatgtgtgtcctgaaaag
caaccttcaccttccagccacgttcctgaatcggagcctccgagctctccctcttcactg
gaaggctgtgagtcacagtactttgagtttgaaagtggaggtgatatcttttcggtttgg
caagatacccaagcatatagtatggaggcaactcaggattatcaacaaggtcatgtttca
acaccagttgacagcagtaattcagagggctcactgaaagatcgcaaaaatgaacggggt
tacataagtgatgaggccatggaagaagaagtgagcttaatagagaagcagatagaaaat
agtggttcttatacaaaagtagtcactaattcggtgttgcaagaatctagtagtaaggga
aatgcaaaagatcatctggagaattttacagacaaagatactgttgctaaagatttcaca
gtggcctcaaaactgaccgaacccagagcatctacatcgaacacctcattagcttccaag
ttggcccttaagaaaaacagtgcgagccaacggaataatgtagaaaagtctaaggtagca
agaactattcaaagaagtcctaaaatatctcctgttctcaaagcagcacaaaataaaaaa
ctacttcaaactacatcaagaaattctcaacctggtatgtcaatgcctgctgtggttcct
ccaaggaaagttcggcagcgtcctgcaccagcatcaactgtagaaaaactcggtctgaag
aaggcaccccgcaaagcatttgaattatcccagcgctctttggagagtatagttcaactg
cgcagccatgggaaagctgcagggagagttggagttccacagaaacggaagactaaggaa
acggctgctcagaaattgtctataaagcataataaaaaattcctagcctgccaagatcgt
cagtatttaaggcagacaaggccccaaaaaaatgtcagagcaaaaaatcctgcaggaagt
tctgagagtagaaacaaagttagtaaagtggatgcaaaatctctgaagcaaaaacctgaa
agtttagaactggcaactcttgaagaaaccattgaaaacgaaagagagaaaaaaagggaa
gaggctgtttgtccctctgccagtgagagaaaatttagaagccttgctgtggaggaggag
ttacgggtctctaaaatgcctcattctttagacttgaacagaaaatcagagggtaacagt
atgaaggttcctcctgtacctatgggttcaagtctctcttcagctgcgcttgaaggtgat
aaagatgaaccatcgggaaaaggttgcattgtgcagcctgagtgtgagaagacaacttca
gaagaaaatgggtgtaaaccgaacaaagacagcgaagatgatgacgatgtttttttaact
cagcgagatcctgtggatatggatttatgttcccaggaggaaagtgttcaagatactgct
atagctagtaaaataccagaagagctggatattgctgaaagccttcagcagaatggatcc
tgcactgttgtgaaatgtaagtacacgggctgtgtggaggacgtggaaacaccaggagag
tgctgtggtaagcattcagccaccagttcggaagcagatcacttgtttgccaaaccttct
ctcccaccgcctaaaacaagaaagccttccactaccaaaattttcagctcagcaagttct
tcacggagcgcagctttcaccaaggatctcgaagatggtaagaaactacctccagcctca
aaaagcaaagtgaatgcagcaaaacaggcagtggtcaggctgccgagggccagagcagta
ccgacgggaaatcaaacgagcagttctccatgtttcactaatgtacctcagccccatgtt
tatgataacgttctccagccactaaatagacagaacaataatgtgtcatgtgtttccaga
aggtctgcgcgacaagtgtgttcttcctttcttggcactaggcagcgtgatgataatatt
tttgttaacgaagtcctgaaatggacttacgaaatgtttgcgacctccagccagtttgga
cctccatgtcatctgcagtctgtagtagcctctgttcctgtccaatttcagaactacaat
gagtattttaatacctttttccccttgatgatgctaaatgcctttgaaacactggcacag
gagtgggtagaaaaccagagagtgagagagaggaatttctgcttgctaaacgtaaggagg
ttctgtgctgactcaaatacagcagaatttgaagctcattttcaagaaactgatttggca
aggcagcttcatccaaaggaggatgacttagtctttctggtggtccaaaagaaaaaagac
acctttgggggagaaagtgagatggacaaccatacagcctatcatgttgggctcgtgaca
cgattttgtcgtgcggctggccgttcaacaagacaaaaggatcagcctgctgtctatcaa
gttgctgtgaaaactcaactcaatttgtcattcttcataaataagcaagtgaagtgtgtg
gtggttggctccctggtgaccacgcaccgatcattcaaaggtctattactgttgagcagg
agtccactggctaaacccatcataaatccaagtcacagtgacttctgccccagagatgtg
cgtgtagcttcagaaagtgctacattgggtatgaaggaatacaatgaagatcaaaagaga
gccattgacacagcttatgctatggtaaagcaacatccagcgcttcccaagatctgcctc
atccacggaccacctggaacagggaaatcgagaactattgttgggcttctgtcccgtgtt
ttgagggagaacactaggaatgagaaaacaacgagaagaccaaattccaaggtcaagcca
aaccgttttctagtttgtgcaccatcaaatgctgctgttgatgaagtcatgaaaaaaatc
atcattgcctttaaggaaaaatgccagaacagacaggagcctttgggaaattgtggtgat
atcaaattagtgcgacttggtgctgaaaaagccatcaacagtgaagtccggcgatttagc
ctggataaccaagttgaacacagaatgaaacggaagacaactgatgtggagcagaatctt
cagaagcaaaaagaagctatagatcaaaggctggatgagctgactcgtcagcgtgccatg
aacaaatgtgggaagagggagagtcaaatgatagatggtgaatttaacagactttcgaag
gagagagaacgggttgcttatgacctaaagcaggttcgagtgtactctcagaaaatacag
gcagatatcatcttggagtccgacatcatctgctgcacactgagtgcaagtggaggaggt
ctgctggaatcaactttttcgcggcaaggacttgatcctttcagctgcgtcatagtggat
gaggcaggacaatcctgtgaggtcgaaacactgattccactgatccaccgctgtaataaa
cttgtcctcgttggagatcccagacagcttcctcctactgtaaaatcagtaacagctcag
gactgtggctacgggcagtccctgatggctcgtctgcaccagcacctggaggagcaagtg
cgcctggaggtgatacggagcctgcccgttgtgcagctgactgtgcagtacaggatgcac
cccgacatctgcctcttcccttccaactatgtttattgcaggatgctaaagactgacaaa
gcaacagaagagaacagatgttcctcagagtggccattccagccctaccttatctttgat
gtaggagatggtcgagaggaacgagaccatgactcttttagtaatcctcaggaagtaaaa
ctggtgatggaattaattagaacaattaaagaaaagaggaaggatctgggtcttcgtcac
attggaataattaccccttacagcgcacagaagaagaaaatccaagaccaactggacaga
gtgtataggaataacagcccgggagaagtggacacagtggatgcattccagggacgagag
aaagactgtgtaatagtcacgtgtgtccgggcaaacatcatgagggggtcaattgggttt
ctggcgagtcttcagcgtctgaacgttacaattacccgagccaaattcagcctcttcatc
cttggaagactggaaacgctcatggaaaacagagactggaatgagttgattcaggatgct
cataaaagaggtgccattatcaagacatcagaagaaaactacaggaaagatgctgttaaa
attttgaagcttaggccaacagttaggccccgaactcaagcagggacaaatatacctcct
ctgttgcaggctgtttcttccagtagcaggaggggtgagcttgcaacacccagggaggtc
agcactccgcggggacttgctgctggtgctggtcatgcagtgcctcaaggaagccaaggg
cccccgcagatgcagggggctcaggccgcagacaccaggaaaggcagtgcctttgtgccc
gtggagcctgcagtgcttcctgctgcccaggagaaaccacgggacccacggctggcgagt
atggccagtagaactgaagtgaaagggaaggagcaggcccttaaagacagcaatcggcca
gcccagagcaagcccggatcagtgtcacagcaaggccttgatgtgtcctcagctgccagc
ggtccaatttccagaacagaaacttgtatgaggcccctgcaaatggtgagacaatgtgac
atgccttccacgtcaccttacacagctcagcacgagggtggcttgagagctgctgtattg
agaagcagttcaagagcccacagcgaaggaggtcaaggtgacagtggtgtgttgaacaga
gactgtcgtgtttcaacgaggagaacacccgagagcacggaatcaagcagtgccaagcga
agaaagacctctcagtga
DBGET
integrated database retrieval system
