Buceros rhinoceros silvestris (rhinoceros hornbill): 104501184
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Entry
104501184 CDS
T08612
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104501184 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
brhi00536
]
104501184 (COL3A1)
Glycosaminoglycan binding proteins [BR:
brhi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104501184 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
104501184
NCBI-ProteinID:
XP_010143251
LinkDB
All DBs
Position
Unknown
AA seq
1460 aa
AA seq
DB search
MMSFVQKVSLFILAVFQPSVILAQQDALAGCTHLGQVYADRDVWKPEPCQICVCDSGFVL
CDDITCDDQELDCPNPEIPFGECCPVCPQTTPQPTRAPVIPRGPKGDPGSPGAPGRNGPP
GPPGLPGTPGAPGPPGVCQSCPSINGGSFSPQYDSYDVKAGGPGIVYPQAISGFPGPPGP
SGPPGPPGQAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGLKGQRGFDGKDGARGESGAPGPKGETGLPGANGAPGQPGP
RGPAGERGRPGNPGGPGAHGKDGSPGAAGAPGPPGPPGTAGFPGSPGFKGEAGPPGPAGS
SGSPGERGEPGPQGNAGPPGPQGPPGRAGSPGSKGEMGPSGIPGAPGLPGGRGLPGPPGA
SGNPGAKGSPGEPGKNGAKGDPGPKGDRGENGTPGAPGPPGEEGKRGANGEPGQNGVPGT
PGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGMRGLPGI
PGSPGSDGKPGPPGSQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGTPGPAGKNGDVGLPGPPGPTGASGERGEPGPSGPPGLQGLPGGPGPAGENGKPGEPGP
KGDVGGPGFPGPKGENGVPGERGAPGPPGSPGARGGPGPAGSEGAKGPPGPPGAAGGTGL
PGLQGMPGERGAPGSPGPKGDKGEPGGKGADGIPGARGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPMGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGA
AGPQGGPGAPGPPGPQGIKGDRGSPGGPGAAGFPGARGLPGPPGSSGSPGPPGNAGPAGK
DGPPGPPGSAGSPGGPGPAGTRGEPGVPGEKGPPGARGERGAPGEPGPQGIVGGRGNTGL
PGLRGPSGPPGMAGAKGEDGKPGTNGIPGERGAPGPQGPVGQRGLPGEPGRDGNPGSDGS
PGRDGSPGGKGDRGENGSPGPPGPPGHPGPAGTSGAPGKAGERGFQGPAGPPGSTGPAGA
RGPAGPQGPRGDKGEPGERGSTGIKGHRGFPGSPGLPGPPGPLGPQGAIGGPGAAGARGP
PGPAGPPGKDGRGGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPAGPPGPCCAGGVAGL
GAGEKGPGVYGYEYRDEPKENDINLGDIISSMKSINNQIENIISPDGSRKNPARNCRDLK
FCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPSTVPRKNWWTDKSSGRKYV
WFGESMNGGFQFSYGDPDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDKANGNV
KKSLKLMSSVESEIKAEGNTKFTYAVLEDGCSEHTGEWGKTVFEYRTRKTMRLPVVDIAP
MDIGGPDQEFGVDIGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtatctttgttcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagacgcactcgcaggatgtacccatcttgggcaggtttatgctgac
agggatgtttggaaaccagagccatgccaaatctgtgtgtgcgactcaggatttgttctc
tgtgatgacatcacgtgtgatgatcaggagctggactgtcccaacccagagattcccttt
ggggagtgctgtccagtttgtccacaaacaacaccccaacctacaagagctcctgtaatt
ccccgaggccccaaaggagaccctggttctcctggggctccaggcagaaatggtccccct
ggtcctccaggactcccaggaactcctggagctcccggcccacctggagtctgccagtca
tgtcccagtataaatggaggcagtttttctccacagtatgattcctatgatgtgaaggcc
ggtggacctggtatcgtttacccacaggccattagtggctttccaggaccccctggtccc
agtggtccccctggcccacctggtcaagcaggtcctcctggctctgctggataccaaggt
tcccctggagaaccaggacaacctggccctcctggacctccaggccctgttggaatgata
ggcccagttggtccaccaggaaaagatggagaaccaggaagaccaggaagaaatggagac
cgtggaatccctggattaccgggtcacaagggacaccctgggatgcctgggatgcctggg
ttgaaaggtcaacgaggctttgatggaaaagatggtgccagaggtgaaagcggtgctcct
ggtccaaagggtgaaactggtcttcctggagcaaatggagcaccaggccaaccgggacca
agaggtccagccggtgaaagaggaagacctggaaatcctggaggcccgggtgcccatgga
aaagatggatctccaggagcagcaggcgcaccaggtcccccgggtccccctggaactgca
ggatttccaggctctccaggttttaagggtgaagctggtcctcctggtcctgctggttct
agtggtagtcctggagagagaggagaacctggtcctcagggtaatgctgggccacctgga
cctcagggccctcctggaagagctggaagccctggcagcaagggtgaaatgggaccttct
ggtattcccggagctcctggtctgccaggaggccgtggtcttcctggtcctccaggtgca
agcggaaaccctggagcaaaaggcagtccgggagaacctggtaagaatggagcaaaagga
gacccaggaccaaaaggcgaccgtggtgaaaatggcacaccaggtgctcctgggcctcct
ggtgaggaaggcaaaagaggtgcaaatggtgaacccggccagaatggcgtacctggtaca
cctggagaaaggggctcccctggtttccgtggcttaccgggtagcaatggacttccaggt
gaaaagggtcctgcaggtgaacgcggtagcccaggtcctcctggccccagtggacccgca
ggagaacgtggacaggatggaggcccaggtcttcctggaatgagaggtttgcccggaatt
ccaggaagccctggaagcgatgggaaaccaggccctccaggtagtcagggtgaatctggc
cgctctggtccgcctggccctccaggtcctcgcggtcagccaggtgtaatgggtttcccc
ggtcctaagggcaatgagggtgcaccaggtaagaatggagaaagaggccctggaggacca
cctggaacacctggtcctgctgggaagaatggtgatgttggcctcccgggtcctcctgga
cctactggtgcttctggggaaagaggagaaccagggccatcaggtccacctggcctccag
ggattgcctggtggaccaggaccggctggagagaatggaaagcctggagaaccagggcca
aagggtgatgttggaggacccgggttcccaggccctaagggtgaaaatggtgtgccaggt
gaacgcggtgcacctggtcctccaggatctcctggagcaagaggtggaccaggtcctgct
ggctcagaaggcgccaagggtcctcctggaccccctggtgctgctggaggcacggggctg
cccggcttacaaggaatgcctggagaaagaggagctcctggaagccctggaccaaaaggg
gacaagggagagcccggtggcaaaggtgctgatggcattccgggtgcaagaggagagaga
ggtaatgtaggtcccatcggtccacctggtcctgccggcccacctggagataagggagag
actggtccagcgggtgccccaggtccaatgggttcccgtggtggtcctggtgaacgagga
gaacaaggtcttcccggacctgctggattccctggagctccaggacaaaatggagaacct
ggtgggaaaggagaaagaggcccacctggtctaagaggagaggctggaccccctggagct
gcaggtccacaaggtggtcctggtgcaccaggtccacctggtccccaaggaataaaagga
gaccgtggatctcctggaggccctggtgctgctggtttccctggtgctcgtggtctacct
ggtccccctggtagcagtggtagtccagggccccctggtaatgccgggcctgcaggcaag
gatgggcctcctggacctcctggtagcgccggttctcccggtggtccgggacctgctgga
acaagaggtgagcctggcgtaccaggcgaaaaagggccaccaggtgcacgaggagaaagg
ggcgcaccaggtgaaccaggccctcagggcattgttggtggccggggtaacacgggtttg
ccaggtctgcgtggcccaagtggtccacctggtatggcaggtgccaagggtgaagacggt
aaaccaggcaccaatggtatccccggagaacgcggtgctcctggtccacaaggtcctgtt
ggacaaaggggcctgcctggagagcctggcagagatggtaaccctggctcagatggctct
cctggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaaatggttctcctggc
cctccaggacctcctggtcacccaggacctgcaggtaccagtggtgcacctggaaaagct
ggtgaaagaggatttcagggtccagctggtcctcctggctctactggtcctgctggtgct
cgtggtcctgctggtcctcaaggtcctcgcggtgataaaggtgaacctggcgaacgaggc
agcactggcataaagggtcatagaggatttcctggttcacccggtctccctggtcctcct
ggtcccctgggtccacaaggtgcaatcggaggtccgggagctgcaggtgcaaggggtccc
ccaggaccagctgggccacctggaaaagatggtagaggtggctatccaggtccaattggt
cctcctggcccacgcggtaacagaggtgaaagtggccctgcaggtccaccaggccagcct
ggtcttcctggtcctgctggtcctcctggtccatgttgtgctggtggtgtggctggcctg
ggtgctggtgaaaaaggcccaggggtctacgggtatgaatatcgagatgagccaaaagaa
aatgatatcaatctgggtgacatcatatcttcaatgaaatcaataaacaaccagattgaa
aacatcattagtcctgatgggtcacggaagaatccagctcgtaactgcagagatctgaaa
ttctgccatcctgagctcaagagcggagagtactggattgatcctaaccaaggctgcaag
atggatgccattaaagtatactgtaatatggaaactggtgagacgtgcctcagcgctaac
cccagcactgtgccaaggaagaactggtggaccgacaaaagcagtggaaggaaatacgtt
tggtttggagaatctatgaatggaggcttccagttcagctatggagatcctgatcttcca
gaggatgtctcagaagttcagctggccttcctccgcatcctctccagccgtgcctcccag
aacatcacctaccactgcaagaacagcattgcctacatggataaagccaacggaaatgtt
aaaaagtctctgaaactgatgagctctgtggaaagtgagatcaaagctgaaggaaacacc
aaattcacatatgctgttctggaagatggctgtagtgaacacaccggcgaatggggtaaa
acagtctttgaatacagaacgcgcaagacaatgaggttgcctgtggttgatattgcacct
atggatatcggtggtcctgatcaggaattcggcgtggatattggcccggtctgcttctta
taa
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