Entry |
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Symbol |
dnaE
|
Name |
(GenBank) DNA polymerase III subunit alpha
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KO |
|
Organism |
bri Brevibacterium sp. CS2
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:bri00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDF13_12565 (dnaE)
03430 Mismatch repair
FDF13_12565 (dnaE)
03440 Homologous recombination
FDF13_12565 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:bri03032]
FDF13_12565 (dnaE)
03400 DNA repair and recombination proteins [BR:bri03400]
FDF13_12565 (dnaE)
Enzymes [BR:bri01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FDF13_12565 (dnaE)
DNA replication proteins [BR:bri03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FDF13_12565 (dnaE)
DNA repair and recombination proteins [BR:bri03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FDF13_12565 (dnaE)
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
complement(2789804..2793385)
|
AA seq |
1193 aa
MSSDSFVHLHVHTEYSMLDGAARVGDLMAATKEMGMPAIATTDHGYLFGAFDFWSQATSA
GVKPIIGVEAYVTPGTSRGDKTRVKWRTDESQRGDDVSGGGAYTHMTLLAENNTGMQNLF
RASSVASLDSAFGKWPRLDRELIENHASGLIATTGCPSSEVQTRLRLGQYDEALRAASEY
KDIFGAGNYYCEIMDHGLSIERRVIKDLLRLAKELDLPLVATNDLHYTHESDAKAHEALL
AIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSPAEMRALFKEMPEACDNTLEIAERCAVSF
DTSANYMPKFPCPPGEDETSWLIKEVDKGLHYRYPGGIPDEVRKQADYELEVIISMGFPG
YFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLIFERFLNPERVSM
PDFDVDFDDRRRGEVIEYVTRKYGSEYVAMIVTYGTIKTKQALKDSARVLGKPFSLGERL
TKALPPPVMAKDIPLADIEDPQAKRYGEAGEFREFVASDPDAQETFATAKGLEGLKRQWG
VHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNLTIISDAI
ANIELNRDFHLDLEQLALDDAESYKLLARGDTLGVFQLDGAGLQGLLRLMQPDNFEDISA
TLALYRPGPMGAQSHTNYALRKNDQQPITPIHPELEEPLRDILDTTYGLIIYQEQVMAIA
QKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFEGMKERGFSEAAAQALWDILLPFSDY
AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDNKDKLAIYLGECRRMRITVLPP
DVNESAQNFTPVGTDIRFGMGAVRNVGANVVDGIVEARQDKGAFTSFTDFLDKVPSHVCN
KRTIESLIKSGAFDSLGHTRRSLVEVHEEAVDSVIGVKRQEAAGQFDLFAGLGGDDASET
SFSVSIPDRPEWEKKEKLAFEREMIGLYVSDHPLNGLEGVLQSEAEASIAEIVDPENTRP
EGSSVKVCGMITQVQRRVSKNSGKPYGIVTVEDLEASVEVMFFGDVYEPVATLLATDLVV
TVTGRIRRSDDRPASLMAQSMTIPDVTDPADRPLHITMPVQRCTPELVEQLGEILRANSG
PTEVRLSLTQPGRSIVMKLDASVRVTPGPSLFGDLKALLGAQCLQVSSPSMFG |
NT seq |
3582 nt +upstreamnt +downstreamnt
gtgagcagcgacagcttcgtacatctgcacgtgcacaccgagtactcgatgctcgacgga
gcggcccgcgtgggcgatctcatggcggcgaccaaggagatggggatgcccgccatcgcc
accaccgaccacgggtacctgttcggcgcgttcgacttctggagccaggcgacgagcgcc
ggggtcaagccgatcatcggcgtcgaggcctacgtcacccccgggacgtcacgcggggac
aagacccgcgtcaagtggcggaccgacgagagccagcgcggcgacgacgtgtccggcggc
ggcgcctacacccacatgacgttgctggcggagaacaacaccggcatgcagaacctgttc
cgggcgtcctcggtggcctcgctcgactccgcgttcggcaagtggccccgcctcgaccgg
gagctcatcgagaaccacgcgagcggcctcatcgccaccaccgggtgcccctcgagcgag
gtgcagacgcgcctgcgcctgggccagtacgacgaggcgctgcgcgcggcctcggagtac
aaggacatcttcggcgccggcaattactactgcgagatcatggaccacgggctgtccatc
gagcgccgggtcatcaaggacctgctgcggctggcgaaggagctcgatctcccgctcgtc
gcgacgaacgacctccactacacgcacgaatcggatgcgaaggcgcacgaggcgctgctc
gcgatccagtccggctccaagctcatcgagccgacctacgaccagggcggcagccgcttc
gcgttctccggatccggctactacctcaagtcgccggcggagatgcgcgccctgttcaag
gagatgcccgaggcctgcgacaacaccctcgagatcgccgagcgctgcgcggtgtccttt
gacacctcggcgaactacatgccgaagttcccctgcccgccgggcgaggacgagacctcc
tggctcatcaaggaggtcgacaagggcctccactaccggtatcccggcgggatccccgac
gaggtgcgcaaacaggcggactacgagctcgaggtcatcatctcgatgggcttccccggc
tacttcctcgtcgtcgccgacttcatcaactggtcgaaggacaacggcatccgggtgggc
ccgggccgcggctccggcgccggctcgatggtcgcctacgcgatgcgcatcaccgacctc
gacccgctcgagcacggcctgatcttcgagcgcttcctcaatcccgagcgcgtctccatg
cccgacttcgacgtcgacttcgatgatcgtcgccgcggcgaggtcatcgagtacgtcacc
cgcaagtacggcagcgagtacgtcgcgatgatcgtgacctacggcacgatcaagaccaag
caggcgctcaaggactccgcgcgcgtgctcggcaagccgttctcgctgggggagcggctc
accaaggcgctgccgccgccggtcatggccaaggacatcccgctggccgacatcgaggac
ccgcaggccaagcgctacggcgaggccggggagttccgcgagttcgtcgcctccgacccg
gacgcgcaggagaccttcgccaccgccaagggactcgaggggctcaagcggcagtggggc
gtgcacgccgcgggcgtcatcatgtcctcggagccgatcatcgacgtgatcccgatcatg
cgccgcttccaggacggccaggtcatcacccagttcgactaccccacgagcgagggcctg
gggctcatcaagatggacttcctgggcctgcgcaacctcacgatcatctccgacgcgatc
gcgaacatcgagctcaaccgcgacttccacctcgacctcgagcagctcgcgctcgacgac
gcggagtcctacaagctgctggcccgcggcgacacgctcggggtgttccagcttgacggc
gccggcctgcaggggctgctgcgcctcatgcagccggacaacttcgaggacatctccgcg
accctcgcgctctaccggcccggcccgatgggcgcccagtcgcacacgaactacgcactg
cgcaagaacgaccagcagccgatcacgcccatccaccccgagctcgaggagccgctgcgc
gacatcctcgacacgacctacggcctcatcatctaccaggagcaggtgatggcgatcgcg
cagaaggtcgcgggatactcgctcggccaggccgacatcctgcgccgcgcgatgggcaag
aagaagaagtccgagctcgacaagcagcaggtcggcttcttcgaggggatgaaggagcgc
ggcttctccgaggccgcggcgcaggcgctgtgggacatcctgctgccgttctccgactac
gcgttcaacaaggcccactccgcggcctacggcgtgatctcctactggaccgcctacctc
aaggcgcactacccggcagagtacatggccgccctgctgacctcggtcggggacaacaag
gacaagctcgcgatctacctcggcgagtgccgccggatgcggatcaccgtgctgccgccg
gacgtcaacgaatccgcgcagaacttcaccccggtcggcaccgacatccggttcgggatg
ggcgcggtgcgcaacgtcggggcgaacgtggtcgacggcatcgtcgaggcgcgccaggac
aagggcgccttcacctccttcaccgacttcctcgacaaggtgcccagccacgtgtgcaac
aagcgcacgatcgaatcgctcatcaagtccggcgcgttcgactcgctcgggcacacccgc
cgctcgctcgtcgaggtgcacgaggaggccgtcgactccgtcatcggcgtcaagcggcag
gaggccgcgggccagttcgacctgttcgccgggctcggcggcgacgatgcgagcgagacg
agcttctccgtctcgatccccgaccgcccggagtgggagaagaaggagaagctcgcgttc
gagcgggagatgatcggcctctacgtctccgaccacccgctcaacgggctcgagggcgtc
ctgcagagcgaggcggaggcatcgatcgcggagatcgtcgacccggagaacacccggccg
gagggctcctcggtgaaggtgtgcgggatgatcacgcaggtgcagcgccgggtgtcgaag
aactccggcaagccctacggcatcgtcaccgtcgaggacctcgaggcgagcgtcgaggtg
atgttcttcggcgacgtctacgagcccgtggcgacgctgctcgcgaccgacctcgtcgtc
accgtgacgggacggatccggcgctccgacgaccgcccggcctccctcatggcgcagtcg
atgacgatccccgacgtcaccgaccccgcggaccggccgctccacatcaccatgccggtg
cagcggtgcaccccggagctcgtcgagcagctcggggagatcctgcgcgcgaactccggg
cccaccgaggtccggctcagcctcacccagcccggccgcagcatcgtcatgaagctcgat
gcgagcgtgcgggtgaccccggggccgagcctgttcggcgacctcaaggcgctcctcggc
gcccagtgcctgcaggtgtcctccccgtcgatgttcgggtga |