Brucella sp. 09RB8471: BKD03_06390
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Entry
BKD03_06390 CDS
T06323
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brj
Brucella sp. 09RB8471
Pathway
brj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKD03_06390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brj03019
]
BKD03_06390
03009 Ribosome biogenesis [BR:
brj03009
]
BKD03_06390
Enzymes [BR:
brj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKD03_06390
Messenger RNA biogenesis [BR:
brj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKD03_06390
Ribosome biogenesis [BR:
brj03009
]
Prokaryotic type
rRNA processing factors
BKD03_06390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
APX69080
LinkDB
All DBs
Position
2:91187..93955
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AA seq
922 aa
AA seq
DB search
MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSDRSERNDRAR
RNRRRGGRRDGQNGEAQANGADKDLPAAEPVGPGFADYVAGTPAAALTQKGDVISEALDN
GDDEDVENEEDMVESVGSEDALEELPTHTRTSRRQYNIQEVIKRRQILLVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIVKELEVPQGMGVILRTA
GANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV
SGENGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNGVEAQLDRMLVPQVTLKSGGYLI
INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE
KRNNRAVEKKMKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCPHCGGTGH
IRSDSSMALHIIRGIEDYLLRHSGFDIHVRTPAASALYVLNHKRQILADLEGRFGVEISI
DADESVGNQHFVIDKGAPSTRPVTPSAVQPMVYEDDIEDPEIPVEEDETEEEARTDVQAG
EERSEENDRKRRRRRRRRGGRERDGRELSAQEEAVSEEASEEDNETDQANEAVSSASMSE
EDRRKKRRRGRRGGRKNRREDDNRARRIPDPEFVGYTPVLPVKAEESIGEVVETVETVEA
PVVEAAPEEKPEKPARKPRARKTAKTEEAAEEVIAAEAEEKPEKPARKTRARKKAVEEAP
ATEAAAPAEEVVPEKPKRRTRKAAAKPVVEAEDVAEMKETVVAEAQVETVAEPKSTEPVV
TSSESEDQKPKRSGWWQKKGFF
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaaatgcttatagatgcctcccacccggaggagacccgcgttatcgtcacg
cgcggcaacaagattgaagaattcgatttcgaatcggaacataagaaacagctgaaaggc
aatatctacctcgcacgcgtcacccgtgtcgaaccgtcgcttcaggctgcattcgtggaa
tatggcggcaatcgccatggcttcctggcattttccgaaattcatcccgactattaccag
atcccggtcgccgaccgccttgcgctgcttgaagcggaagccaaggccgcacgggcagaa
gacgacgaggacgaaccgcgcgccaaaagcgaccgcagtgaacggaacgaccgcgcgcgc
cgcaatcgccgccgtggcggccgccgcgatggccagaatggcgaagcgcaggcaaacggt
gctgacaaggacctgccagcagccgagccggtcggtccgggttttgcggattacgttgcg
ggaacgcccgccgctgctctcacgcagaaaggcgatgtaatttccgaagccctcgacaat
ggcgatgacgaggatgtcgagaacgaagaggacatggtcgaatcggtcggctcggaagat
gctctggaagaacttccgacccacacccgcaccagtcgccgccagtacaatattcaggaa
gtcatcaagcgccgccaaattcttctggtgcaggtggtcaaggaagagcgcggcaacaag
ggcgctgctctcaccacctatctttcgcttgccggacgttattcggtactgatgcccaac
accgcgcgcggtggcggcatttcgcgcaagatcaccaatccgcaggaccgcaagcgcctg
aaagagatcgtgaaggaactcgaagtgccgcagggcatgggcgtgatcctgcgcacggca
ggcgcaaaccgcaccaaggcggaagtcaagcgcgactatgaatatctgatgcgcctgtgg
gaaaatgtgcgcacgctgacgctgcaatcgacggcgcccgcgctcgtctatgaagaaggc
agcctcatcaagcgctctatccgtgatctttacaacaaggacatcacggaaatactcgtt
tccggcgagaacggctatcgcgaggccaaggatttcatgcgtatgctcatgccgagccat
gcgaaggtcgtccagccttaccgcgatcatattccgatcttcacacgcaacggcgtggaa
gcgcagcttgaccgtatgcttgtgccgcaagtgacgctcaaatcgggcggctacctcatc
atcaaccagacggaagccctggttgccatcgacgtcaattcgggccgctcgacccgcgaa
cattcgatcgaggacaccgcgcttcagaccaatctggaagcagccgaagaagttgcgcgc
cagttgcgccttcgcgaccttgcgggcctgatcgtcgttgacttcatcgacatggaagaa
aagcgcaacaatcgcgctgtcgaaaagaagatgaaggaatgcctgaaggacgaccgcgcc
cgcattcaggtgggccgcatctcgcatttcggccttctggaaatgtcgcgccagcgcatc
cgcgcatcggttctggaaagcaccatgcaggtctgcccgcattgcggcggcaccggacat
atccgttcggattcctccatggcgctccatatcattcgtggtatcgaagactatctgctg
cgccattcgggctttgatattcatgtccgcacccctgcggcatccgcactttatgtgctc
aatcacaagcgccagattttggccgatctggaaggacgctttggcgtcgagatcagcatt
gatgccgacgaaagtgtaggaaaccagcactttgtcattgataagggtgcgccttcgacc
cgccccgtcaccccgtcggcagtacagccgatggtctatgaggacgatatcgaagaccct
gaaatcccggtcgaagaagacgagacagaagaagaagccaggaccgatgttcaggctggc
gaagagcgcagcgaagaaaacgaccgcaagcgccgtcgccgtcgccgtcgtcgcggtggc
cgcgaacgtgacggtcgtgagctgtccgcgcaggaagaagccgtttcggaggaagcatcc
gaagaggataatgaaaccgatcaggccaatgaggccgtgtcgtccgcttccatgagcgag
gaagatcgccgcaagaagcgtcgtcgcggtcgccgtggcggacggaagaaccggcgtgaa
gacgacaaccgtgcgcgcagaattcctgacccggaattcgtcggttacacacctgttctg
ccggtaaaggccgaagaaagcatcggcgaagtagtggaaacggttgaaaccgtggaagca
cctgtcgttgaggctgcgccggaagaaaagcctgaaaagcccgcacgcaagccgcgcgcc
cgcaaaacagcaaaaactgaggaagctgcggaagaagtgatcgctgccgaggctgaggaa
aagcctgaaaagccggcccgcaaaacgcgcgcgcgcaagaaggctgtcgaggaagcgcct
gcaactgaagccgcagcgcccgccgaggaagtggtacctgaaaagccgaagcgccgtaca
cgcaaagctgccgccaagccggttgtggaagccgaagacgttgccgagatgaaggaaacg
gttgtggcagaagcacaggtggaaaccgtcgcggaaccgaaaagcacagagccggtcgta
acctccagcgagagcgaagaccagaagccgaagcgttcgggctggtggcagaagaagggc
tttttctaa
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