Bradyrhizobium sp. SK17: CWS35_02185
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Entry
CWS35_02185 CDS
T05325
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brk
Bradyrhizobium sp. SK17
Pathway
brk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWS35_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brk03019
]
CWS35_02185
Enzymes [BR:
brk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWS35_02185
Messenger RNA biogenesis [BR:
brk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWS35_02185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
DUF8086
SUa-2TM
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AUC93262
LinkDB
All DBs
Position
467790..469208
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AA seq
472 aa
AA seq
DB search
MTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI
LHRLLENRIRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR
AVMQGVEVMVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR
RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPAVLAQLL
KQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEIRTLV
ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMGYLRD
IERLIRITVPREDRRTQGGREAAAPAQATHPHRGGRSAPRAHNVRGNEAAPGAKGPRRRR
RPGGNKGAPQTSRGESPRPSQAGNSEGIQGVAFLHRESRPNPQHNRNNRPKH
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggcctcgccgatcccatcgcccgcgcgcttcgagaagag
aattatctcacgccaacccccatccaggcccaaaccatcccgctggcgctcgccggccgg
gatgtcgtcggtatcgcccagaccggaaccggcaagaccgcgtccttcgcgctgccgatc
ctgcaccggctgctcgagaaccgcatccgcccgcagcccaagagctgccgcgtgctggtg
ctgtcgccaacccgcgaactgtccgggcagatcctcgacagcttcaacacctatggccgc
cacatccggctgtcctcggcgctcgccatcggcggcgtgccaatgggccgccaggtccgt
gccgtgatgcagggcgtcgaggtgatggtcgccacccccggccgcctgctcgatctcgtg
cagagcaacggcctgaagctcaaccaggtcgagttcctggtgctcgacgaagccgaccgc
atgctcgacatgggtttcatcaacgatatccgcaaaatcgtcgccaagctgccgatccgg
cgccagacgctgttcttctcggccaccatgcccaaggacatcgccgagctcgccgaggcg
atgctgcgcgatcccgcccgcgtggcggtgacgcctgtggcctcgacggtcgatcggatc
gcccaacgcgcgatccaggtcgatttcgcggccaagcctgcggtcctcgcccagctcctg
aagcaggagccggtcaaccgcgccctggtcttcacccgcaccaagcatggcgccgacaag
gtggtgaagagccttgccaaggccggcatcgaagccaatgcgatccacggcaacaagtcg
cagaaccaccgcgagcgcacgctggcggcgttccgttccggcgagatccgcacgctggtg
gcgaccgacatcgccgcgcgcggcatcgacgtcgacggcgtcagccatgtcgtgaacttc
gacctgcccaacatcccggaaacctacgtccaccgcatcggccgcaccgcgcgcgccggc
gccgacggggtcgcgatctcgctgatcgccggcgccgaggagatgggctatctgcgcgac
atcgagcggctgatccggattaccgtgccgcgggaagaccgccgcacgcagggtggccgc
gaggcggctgcaccggcgcaggcgacccacccgcatcggggtggccgctctgcgccccgc
gcgcataatgtccgtgggaatgaggctgctccgggtgcaaaagggcctcgccgccgccgc
cgtccaggtggtaataaaggcgcgccgcagacgagccggggcgagtcgccgcgtccgtcg
caggccggcaacagcgaaggcatccagggcgtcgccttcttgcatcgcgagagccggccg
aacccgcaacacaaccgcaacaaccgaccgaagcactag
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