Bradyrhizobium sp. SK17: CWS35_20545
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Entry
CWS35_20545 CDS
T05325
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brk
Bradyrhizobium sp. SK17
Pathway
brk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWS35_20545 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brk03021
]
CWS35_20545 (rpoC)
03400 DNA repair and recombination proteins [BR:
brk03400
]
CWS35_20545 (rpoC)
Enzymes [BR:
brk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWS35_20545 (rpoC)
Transcription machinery [BR:
brk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWS35_20545 (rpoC)
DNA repair and recombination proteins [BR:
brk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWS35_20545 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AUC96367
LinkDB
All DBs
Position
4515739..4519941
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEATLRADMAETDSDIKHKKLAKRLKIVEAFRVSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGMDEEGKMSKRWIETTAGRVMLGNLLPKSTKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPASKWKIVDQTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKAGEEVAKAMMKEISSTKKTAAGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQTDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CDDVRDPATNEVVIKRDTLMEESHVDAIQQAGIQEVKIRSALTCELINGICAKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAI
ARNSEGSLIAMVRNMVVAIVDADGAERATHRIQYGSKMHVDEGDMVKRGQRIAEWDPYTR
PVLTEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRTTRGGSDLRPAIVVKGKDGK
VLKLARGGDARYMLSVDAILSVDIGAKVMPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAETAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDQGDTDMISGEQVDKIEFDALNTKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTGASMARIREVAVKRDKLILDEREKQ
QAAIVPTAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagattatgaatcttttcaatccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgtctccggagaagattctgtcctggtcgtacggcgagatcaag
aagcccgagaccatcaactaccgcaccttcaagccggagcgcgacggtctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgttcggcgc
gagcgcatgggccatatcgagctggcggcgccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcatcggcctcctgctcgacatgacgctgaaggatctcgagcggatcctg
tacttcgagtactacgtcgtgctggagccgggtctgaccgcgctgaaggaccgtcagctg
ctgtcggaagacgagtatctgaaggcgcaggacgagtacggccaggacagcttcaccgcc
atgatcggcgccgaggcgatccgcgagctgctgaagggtctcgagctcgagaagctcgag
gcgactttgcgtgccgacatggcggagaccgactccgacatcaagcacaagaagcttgcc
aagcgtctgaagatcgtcgaggcgttccgcgtctccggcaacaagccggaatggatgatc
atgacggtggtgccggtgatcccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtatcgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcgctgttcgacaacggccgccgtggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgaactgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggcctctccaccacggtgaagcaggccaag
aagctggtcgagaaggagcgtccggaggtctgggatattctcgacgaggtgatccgcgag
catccggtgctgctgaaccgcgcgccgacgctgcatcgtctgggcatccaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgccctgcat
tcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcatggacgaggaa
ggcaagatgtcgaagcggtggatcgaaaccaccgccggtcgcgtcatgctcggcaatctg
ctgccgaagagcaccaagatctcgtacgacatcatcaacaagctgatgaccaagcgcgag
atctccggcgtgatcgaccaagtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggcgtcgaagtggaagatcgtggaccagacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccggtgaagaagtcgccaaggcgatgatgaaggag
atctcgtccaccaagaagacggcggcgggcgcggatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgtggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggttctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgtcgtctggtcgacgtcgcg
caggactgcatcatcacgcagaccgattgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgacgccggcaccgtggtcgcctcgctcggttcgcgtatcttgggccgcacggcc
tgcgatgacgtgcgtgatcccgccaccaacgaggtcgtcatcaagcgcgacaccttgatg
gaggagagccatgtcgacgcgatccagcaggccggcatccaggaggtgaagatccgctcc
gcactgacctgcgagctgatcaacggcatctgcgccaagtgctacggccgcgatctggcc
cgcggcaccccggtcaaccacggtgaggccgtcggcgtcatcgcggcgcagtcgatcggt
gagcccggcacgcagctgacgatgcgcacgttccacatcggcggcgccgcgcagctcaac
gagcagtcgttcgtcgaatccaacttcgacggcaagatcgtgatccggaacaaggcgatc
gcccgcaacagcgagggcagcctgatcgcgatggtgcgcaacatggtcgttgcgatcgtc
gatgccgacggcgccgagcgtgccacccaccgtattcagtacggttcgaagatgcacgtc
gacgaaggcgacatggtcaagcgcggccagcgcatcgccgagtgggacccctatacccgc
ccggtgctcaccgaagtcgagggtacgatcggtttcgaggatctggtcgaaggccagtcg
atctcggaaacgctcgacgaatcgaccggtatcgccaagcgcgtggtcatcgactggcgc
acgacgcgcggcggctcggacctgcgtccggccatcgtggtcaagggcaaggacggcaag
gtgctgaagctcgcgcgtggcggcgatgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacatcggtgcgaaggtgatgcccggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggct
cgcaagccgaaggatgcggcgatcatcgcggagaccgcgggcacgatccgcttcggccgc
gactacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgaggagccgcgc
gagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggttgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtcgaggtc
accgaccagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaacaccaaggccaaggaggagggcaagaagcccgccacggggacgccggttctg
ctcggcatcaccaaggcgagcttgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacgcgcgtgctcaccgaggccgcggtcaacggcaagatcgacccgctcgaaggc
ctcaaggagaacgtcattgtcggccgcctgatcccggccggcaccggcgcctcgatggcg
cggatccgcgaagtcgcggtcaagcgcgacaagctgatcctcgacgagcgcgagaagcag
caggcggcgatcgtgccgacggccccggaagcggagccgctggcactgccgcccgcggaa
tag
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integrated database retrieval system
