Bradyrhizobium sp. SK17: CWS35_22400
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Entry
CWS35_22400 CDS
T05325
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
brk
Bradyrhizobium sp. SK17
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
brk03016
]
CWS35_22400 (rnd)
Enzymes [BR:
brk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CWS35_22400 (rnd)
Transfer RNA biogenesis [BR:
brk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CWS35_22400 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF2292
Motif
Other DBs
NCBI-ProteinID:
AUC96693
LinkDB
All DBs
Position
complement(4891675..4892823)
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AA seq
382 aa
AA seq
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MDLISTTSDLAAACDRLAQHKVITVDTEFLRETTYYPLLCVVQMASADEAIVVDALAPGI
DLKPFFELMSNEAVLKVFHAARQDIEIVWHLSGTIPHPIFDTQVAAMVLGYGDSIAYDQL
VDRVTGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLREVFAALDADLKKRDRSDWVSE
EMEVLTSPKTYDFHPERAWERLKTRVRKPRELAVLIEVAAWREQEAQGRDVPRSRVLKDD
AVGDIATHAPTSLEKLGNLRSLPKGFERSKWGADIIAAVQRGLARDQATLPKLEKPRNNS
NGAATVELLKVLLRMTSERHGVASKVIATVDDLEQIAASDQAEVGALHGWRRELFGEAAL
KLKHGQVALAIDKGRVVRVDRG
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggatctgattagcacgacctccgacctcgccgccgcctgtgatcggctcgcccaacac
aaggtcatcaccgtcgacaccgagttcctgcgggagacgacctattacccgctgctctgc
gttgtgcagatggcaagcgccgatgaggccatcgtggtcgatgcgctggcgcccggcatc
gacctcaagccgttcttcgaactgatgtcgaacgaggccgtgctgaaggtgttccacgcc
gcgcggcaggacatcgaaatcgtctggcatctgtccggcacgatcccgcatccgatcttc
gacactcaggtcgccgcgatggtgctcggctatggcgacagcatcgcctatgaccagctt
gtcgatcgcgtcaccggccaccgccccgacaagacgcatcgcttcaccgactggtcgcgc
cgcccgctgaccgacgagcaactccactacgcggtctccgacgtcacccatctgcgtgaa
gtgttcgccgccctcgacgccgatctgaagaagcgcgaccgcagcgactgggtcagcgag
gagatggaggtgttgacctcgccgaagacctacgacttccatcccgagcgggcctgggag
cggctcaagacccgcgtgcgcaagccgcgcgagctcgcggtcctgatcgaggtcgcggcc
tggcgcgagcaggaagcgcagggccgcgacgtgccgcgctcgcgcgtgctcaaggatgat
gcggtcggcgatatcgccacccacgcgccaacctcgctggagaagctcggcaatctgcgt
tcgctgccgaagggtttcgaacgctcgaaatggggcgccgacatcatcgccgcggtgcag
cgcgggctggcccgcgaccaggcaacactgcccaagctggaaaagccgcgcaacaattcc
aacggcgcggcgaccgtcgagctgctgaaggtgctgctgcgcatgacctcggaacgccac
ggcgtcgccagcaaggtgatcgcgaccgtcgacgatctcgagcagatcgcggccagcgat
caggccgaagtcggcgccctgcatggctggcggcgtgaattgttcggcgaggcggcactg
aagctcaagcacggccaggtcgcgctcgcgatcgacaaaggccgcgtggtgcgggtggac
cggggttag
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