Bradyrhizobium sp. SK17: CWS35_23095
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Entry
CWS35_23095 CDS
T05325
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brk
Bradyrhizobium sp. SK17
Pathway
brk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWS35_23095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brk03019
]
CWS35_23095
03009 Ribosome biogenesis [BR:
brk03009
]
CWS35_23095
Enzymes [BR:
brk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CWS35_23095
Messenger RNA biogenesis [BR:
brk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWS35_23095
Ribosome biogenesis [BR:
brk03009
]
Prokaryotic type
rRNA processing factors
CWS35_23095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUC96810
LinkDB
All DBs
Position
complement(5032763..5035957)
Genome browser
AA seq
1064 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEEHENRGHRRRSRHRNARR
RGHGERVQSEVIEGAGDAPALPAAEAHADAEHHDHGLAAHEGHEHDAHDHAHHDDHEHHH
DHEHHAHGHDDHGHDDHDHDHHDHDHAHDHDHPHEVSAAPGADTASDPVVATVEASVASA
APETVETIEINHEPERAHEEQVEENAAHADDAPHGSTDDVHAPAAEHEHVEYAAFADVAA
PEAAHGDEAGEDDDEDDGEEGEEEEVVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQ
VMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQD
LDVPEGMGIILRTAGASRSKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRS
LRDLYNKEIDEIQVAGDAGYREARDFMKMLMPANVRAVKQYRDGQPLFSRMGVESQLDAM
FSPTVQLRSGGYIVINQTEALVSIDVNSGRATREHHIEDTALKTNLEAAEEVARQLRLRD
LAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLE
SSTEPCPQCGGSGHVRSVSSVALQLLRGIEEILMKGATHNLVVRTRTDVALYVLNHKRGH
LRDLEDSFRVSLSIVADATVHGQQSYIIDRGEQVHTLEAAKALLAAQAAAAPAQPEEADD
EEELFEYEVETDETEGLADEQATGEDAGAAEGEGDGQRRKRRRRRRGRGSSNEAREGAPQ
PREDGDLMHVLPEGTEAVAAGDAEGDEDEADAQQGAARDDQGGSDEAANGDRRPRRRGRR
GGRRRRGAGGPDDGLAGSISDELSPTAAPEAADAVADFDGRDAEPAPSLEQPELVTQPAE
WHPVEAAPAETVVAPVAEAASAVAEDTVADGDRAQRRRSTVREKVSFASSPQPETPAPAL
VQGPAEEAAPAPEPAAAASEPVSAATAEAPARKGWWSRRFGGGN
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagactgcccagcgcaaacagctgcgcggc
aacatttacctcgccaaggtcacgcgcgtagagccgtcgctgcaagccgccttcatcgag
tatggcggcaaccggcacggcttcctggccttcagcgaaatccatcccgactattaccag
atcccggtcgccgaccgtcaggcgctgatcgaagccgacgagcgcgcccatcgcgaagcc
gaggaagagcacgagaaccgcggccatcgccgccgttcgcgccatcgcaatgcccgccgc
cgcggccatggcgagcgcgttcagagcgaggtcatcgagggtgccggcgatgcgccggcg
ctgccggccgccgaagcccacgccgacgccgagcatcacgatcatggcctagccgcccac
gagggccacgagcatgacgcgcacgatcatgcgcatcacgacgaccatgagcaccatcat
gatcacgagcatcatgcccacggtcacgacgatcatggccatgatgatcacgatcatgac
caccacgaccatgatcacgcgcacgatcacgaccaccctcatgaggtgagcgcggcgccg
ggcgccgacacggcgtccgaccccgtcgtcgcgacggtcgaagcgtcggtggcgtctgcc
gcgccggagaccgtcgagacgatcgagatcaatcacgagcccgagcgggcccatgaggaa
caggtcgaggaaaacgccgcgcacgccgacgacgcgccgcacgggtccacggacgacgtt
cacgcccccgccgcggagcacgagcacgtcgaatacgccgcgttcgccgatgtcgccgcc
ccggaggccgcgcatggcgacgaggccggcgaagacgacgacgaggatgacggcgaagaa
ggcgaggaagaggaagtcgtcgaatccgtcggcggcgacgacgtgctcgaggaggttccc
gagcgcgcgttccgcccgcgccgccagtacaagatccaggaagtgatcaagcgccggcag
gtgatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacc
tatctgtcgctcgccggccgttacgccgtgctgatgcccaacaccgcgcgcggcggcggc
atcagccgcaagatcacctcggcccaggaccgctcccggctgaaggaagtggtgcaggac
ctcgacgtgcccgagggcatggggatcatcctgcgcaccgcgggcgcgtcccgcagcaag
ccggagatcaagcgcgacttcgagtacctgatccggatgtgggaaacggtgcgcgacctg
acgctgaagtcgcaggcgccgaccctggtctacgaggaaggctcgctgatcaagcgctcg
ctgcgcgacctctacaacaaggagatcgacgagattcaggtggcgggtgatgccggctac
cgcgaagcgcgcgacttcatgaagatgctgatgccggcgaatgtgcgcgcggtgaagcag
tatcgcgacggccagccgctgttctcgcggatgggcgtcgagagccagctcgacgcgatg
ttctcgccgaccgtgcagctccgctccggcggctacatcgtgatcaaccagaccgaggcg
ctggtctcgatcgacgtcaactccggccgcgccacccgcgagcaccatatcgaggacacc
gcgctcaagaccaatcttgaggctgcggaagaagtcgcacggcagttgcgactgcgtgac
ctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgggcg
gtcgagcgcaagctgtccgactgcctgcgccaggaccgcgcgcggatccaggtcggccgc
atctcgcatttcggcctcttggagatgtcgcgccagcgcatccgcgccagcgtgctggag
agctcgaccgagccctgcccgcaatgcggcggctcaggccacgtccgctcggtctcgtcg
gtggcgttgcagctgttgcgcggcatcgaggaaatcctgatgaagggggcgacccacaat
ctggtggtccgcacccgcaccgacgtcgcgctctatgtgctcaaccacaagcgcggccat
ctgcgcgacctcgaggattccttccgggtctcgctgtcgatcgtcgccgatgccaccgtg
cacggccagcagtcctacatcatcgaccgcggcgagcaggtgcatacgctggaggccgcc
aaggcgctgctcgctgcgcaggccgccgccgcgccggctcagcctgaagaggccgacgac
gaggaagagctgttcgaatacgaggtcgagaccgacgagaccgaagggcttgccgacgag
caggctaccggcgaggacgccggtgcggctgaaggcgaaggcgacggtcaacgccgcaag
cgtcgccgtcggcgccgcggccgcggcagcagcaacgaagcgcgcgaaggtgctccgcag
ccgcgcgaggacggcgatctcatgcatgtcctgccggaaggcaccgaggcggttgccgcc
ggcgatgccgaaggcgacgaggacgaagccgacgcccagcaaggcgcggcccgcgacgac
cagggcggcagcgatgaggccgcgaacggcgaccggcgcccgcggcgccgcggacgccgt
ggcggccgccgccggcgcggcgctggcggaccggatgacggtctcgccggatcgatctcc
gatgaactgagcccgacggcggcaccggaagccgccgacgcagtcgccgatttcgacggc
cgtgatgccgagccggcgccttcgctggaacagcccgaattggttacccagccggcggag
tggcacccggtcgaggcggcacctgccgagacggtcgtggcacctgtggcggaagctgcc
agtgcagtcgccgaggacaccgttgccgacggcgaccgcgcgcagcgccgccgttcgacg
gtgcgcgagaaggtcagcttcgcgtcgagcccgcagcccgagacgccggcgcccgcgctc
gttcagggcccggccgaggaagcggcccctgcccccgaaccggcggcggcagcctcggag
ccggtgtcggccgcaacggccgaggctccggcccgcaagggctggtggtcgcgccgcttc
ggcggtggcaactag
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