Brevundimonas sp. LM2: BZG35_05040
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Entry
BZG35_05040 CDS
T04750
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
brl
Brevundimonas sp. LM2
Pathway
brl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BZG35_05040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brl03019
]
BZG35_05040
Enzymes [BR:
brl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BZG35_05040
Messenger RNA biogenesis [BR:
brl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BZG35_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AQR61098
LinkDB
All DBs
Position
complement(997443..999002)
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AA seq
519 aa
AA seq
DB search
MSTITFESFGLNKALLQALTTEGYTIPTPIQAQAIPDVMLGRDLLGIAQTGTGKTAAFAL
PILHRLAENRVAPLPRTTRCLILSPTRELASQIAESFKAYGKHLGFKVAVVFGGVKYGPQ
ERAIQGGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIP
AKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVERINQSVIHVEQGRKRALLTE
MFADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRV
LVATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMKLLK
DIEKTTRQKIPATDRRNDKSLGLLDQSIMAAGVGTKATMPDREERPRGEGRGARNPRRDG
VKPAHGGQPHRQRKPAPGGNREGGRDGGRDGGGRDQNRGHNGDRSIVSVTPFDPLAADRA
RSAANANRPVAAAKPDGEIARRPRGRRPSNGGKGYVAKA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatcaccttcgaatccttcggcctcaacaaggccctgctgcaggccctgacc
accgagggctacaccatcccgacgccgatccaggcccaggccattcccgacgtcatgctg
ggccgcgacctgctgggcatcgcccagaccggcaccggcaagaccgccgccttcgccctg
ccgatcctgcatcgcctggccgagaaccgcgtcgcccccctgccgcgcaccacccgctgc
ctgatcctgtcgccgacgcgcgaactggccagccagatcgccgagagcttcaaggcctat
ggcaaacacctcggcttcaaggtcgcggtcgtcttcggcggcgtgaaatacggcccgcag
gaacgcgccatccagggcggtctcgacgtcctggtcgccacccccggccgcctgctggac
catatgcagcagaagaccctggacctgtcctcgaccgagatcttcgtcctcgacgaggcc
gaccagatgctggacctgggcttcgtcaagccgatccgccagatcgtcagccgcatcccg
gccaagcgccagaacctgttcttctcggccaccatgccgaccgaaatcgggaaactggcc
ggcgagctgctgaaggacccggtcaaggtccaggtcacgccgcagtcgaccacggtcgag
cgcatcaaccagtcggtcatccacgtcgaacagggccgcaagcgcgccctgctgaccgag
atgttcgccgacgacaacttcacccgctgcctggtcttcaccaagaccaagcacggcgcc
gacaaggtcgcggcctatctggaagccggcggcgtccaggccggtgcgatccacggcaac
aagtcccagccccagcgtgagcgcaccctggccgccttcaaggccggcaagctgcgcgtc
ctggtcgccaccgacatcgccgcgcgcggcatcgacgtcgacggcgtctcgcacgtggtc
aacttcgaactgccgttcgtgccggaagcctatgtccaccgcatcggccggaccgcccgc
gccggggccgacggctcggccatcagcttcgtcgccggtgacgagatgaagctgctgaag
gacatcgagaagaccacccgccagaagatcccggccaccgaccgccgcaacgacaagtcg
ctgggcctgctggaccagtcgatcatggccgccggcgtcggcaccaaggcgaccatgccc
gaccgcgaggagcgtccgcgcggcgaaggccgtggggcgcgcaatccgcgccgcgacggc
gtcaagccggcccacggcggccagccccatcgccagcgcaagccggctccgggcggcaat
cgtgaaggcggccgtgatggtggtcgtgacggcggcggtcgcgaccagaaccggggccac
aacggcgaccgttcgatcgtcagcgtgactccgttcgatcccctcgccgccgaccgcgcc
cgctcggccgccaacgccaaccgtccggtggccgcggccaagcccgacggcgagatcgcc
cgccgcccccgcggccgtcgcccgtccaacggcggcaagggctacgtcgccaaggcctga
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