Brachyspira murdochii: Bmur_0620
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Entry
Bmur_0620 CDS
T01229
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brm
Brachyspira murdochii
Pathway
brm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bmur_0620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brm03400
]
Bmur_0620
Enzymes [BR:
brm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bmur_0620
DNA repair and recombination proteins [BR:
brm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bmur_0620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Fer4_20
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADG70721
UniProt:
D5U7D3
LinkDB
All DBs
Position
complement(745783..749517)
Genome browser
AA seq
1244 aa
AA seq
DB search
MYSGEIISDILIERFTRSEEYLNFDIENIKSITGLKGGSDALLFASLFKKNSILIIKENE
SEAMLLSQSLNFYNIPNYYFPDYDTVPFTKMSPITDIAQERINILYRLINKEHCIIITTI
NAITRKIANREDLKKLYIELHIGDKLDLDNLRLKLYDLGYVIEREVAEKGTASVRGSIVD
IFSVEYDNPIRIEMFDDEIESIRLFNIEDGRSFKSIDNIIIYPVREVVYSDEDVEVFLNK
NSTEKEIKDNIIKRKYFAGSENLLPMFYSNLETIFDYFDYGYVFIDDALKLKTKLITILD
TIRENFNDIDNMFSLIGDIEKLYINNDYFNEIVKKSINISPFITDIDIYKFNFLEGVSFK
SRLTDFLDYVKEYRKKDYLIILSTGHYDQALRFYKIMQDLSPIIIAPEEEKNTKENFKED
FNKKENDNNKEEIKNTEEENHKEIILEDKNDISEENISEEKEDYSKNENNFYIITAQASS
GFIKDGIKTIFIADWEVFGRKRKKVRKIPKVNKNLIETFVDLNVGDYAVHVNYGIGKYLG
LTRKLSNGKEKDYITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKS
KAREDALATARELIKLYAIRSNIHGNVYGADTQWQDDFEASFKYEETADQLRAINDIKED
MESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFED
FPIRIEVLNRFVTSKQAKRNKELLKNGSCDLVVGTHMLLSNDIEFKNLGLIVIDEEQRFG
VKHKEALKRLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSE
EAVVNAIERELKRDGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIME
DFINHKYDILVSTTIIENGIDIPNANTILIDNANRLGLSELYQLRGRVGRSDREAYAYMF
YPSDLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELY
TQMLEEATNEYKGEIKEVTFDTVIDLKHNLFIPDCYISDSKEKISAYKLIMRSQDNEDID
HAKDYMIDKYGKLPKELEDIFDIARLKVILKRIRVLSVMEGQYNIYLKLDKYSKIDTNKL
INLINTKNSGVYFDKDNLNQLIIPVIHEKENDLDWKIEKIKNTILEIESDKINEIENNEG
IKNENNQNNMSITEANFKNNKSSKKGTYIRRSKSPKVIRINKDK
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcggcgagatcatatcagatatattaatagaaagatttactagaagcgaagag
tatttaaattttgatatagaaaatataaaaagtattacagggcttaaaggaggaagcgat
gcattactatttgcatcactttttaagaaaaacagtattttaataataaaagaaaatgaa
agcgaggcaatgctcctaagccagtcattaaacttttataatatacctaattattatttt
ccggattatgatacagtgccttttacaaaaatgtctcctataaccgatatagctcaggag
agaataaatattttatacagattaataaataaagaacattgtattataataacaaccata
aacgccataactagaaaaatagcaaacagagaagaccttaaaaaactttatatagagctt
catataggcgataaactagatttagataatttaagattaaaattatatgatttaggatat
gttatagaaagagaagttgctgaaaaaggtacggcatctgtaagaggaagtattgtagat
atattttctgtagaatatgataatcctataagaatagaaatgtttgatgatgagattgaa
agtataaggttatttaatatagaagacggaagatcatttaaaagtattgacaatataata
atttatccagtacgtgaagttgtttacagcgatgaggacgtagaagtttttttaaataaa
aatagtacagagaaagaaattaaagataatataattaagagaaaatattttgctggaagt
gaaaatcttcttccaatgttttattcaaatttagagactatatttgattattttgattac
gggtatgtatttatagatgatgctctaaaattaaaaacaaaattaataacaatacttgac
actataagagaaaatttcaatgatatagataatatgttttctctaataggagatattgaa
aaactatatattaacaatgattattttaatgaaatagtaaaaaaatcaattaatatatct
ccttttataactgacattgatatatacaaatttaattttttagaaggcgtttctttcaaa
tcaagattgacagactttcttgattatgttaaagaatacagaaaaaaagattatttaata
attctctctactggtcattatgatcaggctttaagattctataaaataatgcaggatttg
tcgcccataattatagcaccagaggaagaaaaaaatactaaggaaaattttaaagaagat
tttaataaaaaagaaaatgataataataaagaagaaataaaaaatactgaagaagaaaat
cataaagagataattttagaagataaaaatgatatatcagaagaaaacatatcagaagaa
aaagaagactattcaaaaaatgaaaataatttttatattataacagctcaagcttcttca
ggatttataaaagacggcataaaaacgatatttatagcagactgggaagtatttggaaga
aaaagaaaaaaggtaagaaagatacctaaagtaaataaaaatctaatagaaacatttgtt
gatttgaatgtaggcgattatgctgtgcatgtaaattatggtataggaaagtatttagga
ttaacaagaaaattatccaacggaaaagaaaaagactatataactttagaatatgctaag
ggtgataaattatatatacctgttgagcagatgaactttgtacagaaatatatatctggt
catggagaagctcctaaattaactcagcttggaggaagtgcttgggataagataaagagt
aaggcaagagaagacgcactagctactgcaagagaattgataaaactttatgccataaga
tctaatatacatggaaatgtttatggtgctgatactcagtggcaggacgattttgaagct
tcattcaaatatgaagaaaccgccgatcaattaagggctataaatgatataaaagaagat
atggaaagcggcaagatgatggataggcttgtatgcggagatgtgggatttggtaaaaca
gaggtggcattcagagcggtatttaaagctataatggctggtaaacaatgtgccatacta
tgtcctactactatactttcacagcagcattataacaatgccaaaaaaaggtttgaagat
tttcctatacgtatagaagttttaaacagatttgttacaagcaaacaggctaaaagaaat
aaagaattattaaaaaatggttcctgtgatttggtagtaggcactcatatgcttttatct
aatgatatagagtttaaaaatctaggacttatagttatagatgaagagcagcgtttcgga
gttaagcataaagaggctttaaaaagattaagattagaaacagatgttctcacactttca
gctactcctatacctagaacattaaatatggctttaactggaataagagatataagtatt
attgaaactcctcctctaaacagaataccagtaaaaacttttgtaacagagttcagcgaa
gaggcagttgtaaatgcaatagaaagagaacttaaaagagatggtcaggtattttatcta
tataacagaatagatactatagaatcattcgcattgatgataaaaaaactatgtcctaaa
gcacgtatatgcgtagcacatggaagaatgacagggcatcagttagaaaaaataatggaa
gattttattaatcataaatatgatattttagtttcaactacaataatagaaaacggaata
gatataccaaatgccaatactatattaatagataatgccaatagattaggtttgtcagag
ctttatcagttaaggggacgtgtaggaagaagcgacagagaggcttatgcttatatgttt
tatcctagtgatttggcattaacagaagttgcttataaaagattggaagctatatcagaa
catacagatttaggagctggttttaaaatagctatgcgtgatttagaaattagaggtgca
ggcaacatattaggaaaggagcagtctggaatgatatatcaggttggttatgaactttat
actcaaatgcttgaagaggctacaaatgaatataagggtgaaataaaagaagttacattt
gatacagtaatagatttaaagcataatctatttataccggattgctatatatctgattca
aaagaaaaaatatcagcatacaaacttataatgcgttctcaggataatgaagatattgac
catgctaaagattatatgattgataaatacggcaaactgccgaaagaattagaagatatt
tttgatatagcaagacttaaagtaatattaaaaagaataagagtattatcagtaatggaa
ggtcagtataatatatatttgaaacttgataaatattctaaaatagatactaataaactt
ataaatcttataaatactaaaaattccggagtttattttgataaagataatctaaatcaa
ttaataataccagttatacatgaaaaagaaaacgatcttgattggaaaatagaaaaaatt
aaaaatactatacttgaaatagaaagtgataaaattaatgaaatagaaaataatgaaggt
ataaaaaatgaaaataatcaaaataatatgagtattacagaagctaatttcaaaaataat
aaaagcagtaaaaaaggaacttatattagaagaagtaaatctcctaaagtaataagaata
aataaagataaataa
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