Breoghania sp. L-A4: D1F64_14800
Help
Entry
D1F64_14800 CDS
T05594
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brn
Breoghania sp. L-A4
Pathway
brn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1F64_14800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brn03021
]
D1F64_14800 (rpoC)
03400 DNA repair and recombination proteins [BR:
brn03400
]
D1F64_14800 (rpoC)
Enzymes [BR:
brn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1F64_14800 (rpoC)
Transcription machinery [BR:
brn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1F64_14800 (rpoC)
DNA repair and recombination proteins [BR:
brn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1F64_14800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXS41065
UniProt:
A0A346R3K6
LinkDB
All DBs
Position
complement(3242075..3246277)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNQQAQPATFDQIRISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKQNQLLSEEEFLMAQDEYGDDSFTA
MIGAEAIREMLMSLDLVRESERLRVEIAEATTELKPKKLAKRLKVIEAFIESRNRPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMLEKEPGEGMVFGDMGELHHALE
TKTVTLHTKIKGRFKTVDIDDNPVSGIYETTPGRLILAELLPKNHAIPFDVANRLMTKKE
ISKMIDSVYRACGQKETVIFCDRIMQLGFGHACRAGISFGKDDMVIPDTKAKLVDDTAAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCTDRVADEMMKRIQAVEYFEDSGRQKPINSVY
MMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIESPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIILEPDCGSTDGITVQAIVDAGQVIASLGIRVLGRT
TAEDVIQASTGDVIVPANTLIEEKDVELIEAANIQSIKIRSVLTCQTQIGVCGACYGRDL
ARGTKVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDQSFIESSFEGEVKIRNRN
AARDSDGNLIAMARNMSIVIVDEDGSERAVHRVNYGAKLHVDEGDKVQRGQRIAEWDPYT
RPVIAEVTGTVAFEDLVDGASVTETTDEATGITKRVVIDWRSSPRTQDLKPAIVVKGPDG
EILKPQRGGEARYLLHADSILSVDTDHKINAGDVMARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRILIEPFDETQEPVEYLVPKVKHFHLQEGDTIE
KGEYLVDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVGINDKHIEVIVRQMLQKIE
LTDVGDSDLINGEQIDRVDLVALNKRLKEEGKKLASGNPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVNGKADTLDGLKENVIVGRLIPAGTGSTVSRIRKVATLRDELILDERKK
RSGAEVAEPALMDLSEGAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctgttcaaccagcaggctcagccggcgacgttcgatcag
atccgcatctcgatcgccagccccgagaagatcctctcgtggtcattcggcgagatcaag
aagccggagacgatcaactaccggacattcaagccggagcgcgacggtctgttctgcgcg
cgcatctttggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtgatctgcgagaagtgcggcgtcgaagtgacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgaactggccgcccctgtggcgcacatctggttcctgaagtcc
ctgccgagccgcatcggtctgctgctcgacatgactttgaaggatctggagcgggttctc
tatttcgagaactacgtcgtgctggagccgggcctgacgccgctgaagcagaaccagctt
ctgtcggaagaagaattcctgatggctcaggacgaatatggcgatgacagcttcaccgcc
atgatcggcgccgaagcgatccgcgagatgctgatgtcgctcgacctcgtgcgcgagagc
gagcggctgcgcgtggagatcgcggaagccaccaccgagctgaagccgaagaagctggcc
aagcggctgaaggtcatcgaggcctttatcgaatcccgcaaccggccggaatggatgatc
ctgaccgtcgtgcccgtgatcccgccggacctgcgtccgctggtgcccctggacggcggc
cgcttcgcgacctcggatctcaacgatctgtaccgccgcgtgatcaaccgcaacaaccgt
ctcaagcgcctcatcgagttgcgcgcgccggacatcatcatccgcaatgagaagcggatg
ctgcaggaatccgtcgatgcgctgttcgacaacggccgccgcgggcgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgattattccggccgttcggtgatcaccgtgggt
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctggacgccaagggcttctcctcgaccgtcaagcaggcgaag
aagctggttgaaaaagagcgtccggaagtctgggatatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgcttcaccgcctgggcatccaggcgttcgag
ccgatcctcatcgagggcaaggccatccagctgcatccgctcgtctgctcggccttcaac
gccgacttcgacggtgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaatggtcagccg
atcatcgtgccgtcgcaggatatcgttctgggtctgtattatctgtcgctgatgctcgag
aaggagccgggcgagggcatggtgttcggtgacatgggcgagttgcaccatgcgctggag
accaagaccgtcacgctgcacacgaagatcaagggccgtttcaagaccgttgatatcgac
gacaacccggtttcgggcatttacgagacgacccctgggcgtctgatcctggccgaactg
ctgccgaagaaccacgcgattcccttcgacgtcgccaacaggctgatgacgaagaaggaa
atctccaagatgatcgacagcgtgtatcgcgcctgcggtcagaaggagacggtgatcttc
tgcgaccggatcatgcaactcggcttcggccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattcccgacaccaaggcaaagctggtggacgacaccgccgccctg
gcgaaggagtacgagcagcagtacaacgacggcctgatcactcagggcgagaagtacaac
aaggtcgtcgacgcgtgggccaagtgcaccgaccgcgtcgccgacgagatgatgaagcgc
attcaggcggtcgagtatttcgaggactccgggcgtcagaagccgatcaactcggtctac
atgatgtcgcactcgggcgcccgtggctcacctgcccagatgaagcagctcgccggcatg
cgtggcctgatggccaagccgtcgggtgagatcatcgaaagcccgatcatctcgaacttc
aaggaaggcctgtcggttctggagtacttcaactccactcacggcgcccgcaagggcctc
gccgacaccgccttgaagaccgccaactccggttacctgacgcgtcgtctcgtcgacgtg
gcgcaggattgcatcatcctggagcccgattgcggctccacggacggcatcaccgttcag
gcgatcgtcgatgcgggacaggttatcgcgtcgctcggcattcgcgttctcggccgcacc
acggcggaagacgtgatccaggcgtcgaccggtgacgtaatcgttccggcgaacacgctg
atcgaggagaaggacgtcgagctcatcgaggcggcgaacatccagtcgatcaagatccgc
tcggtgctgacctgccagacgcagatcggcgtctgcggcgcctgctacggccgcgatctg
gcgcgtggtacgaaggtgaacatgggcgaggcggtcggcgtgatcgcggcccagtccatc
ggtgagccgggtacccagctcaccatgcgcacgttccacatcggcggcacggcgcaggtg
gtcgatcagtcgttcatcgaatcgagctttgaaggtgaagtgaagatccgcaaccgcaac
gccgcgcgggactcggatggcaacctcatcgccatggcgcggaacatgtcgatcgtcatc
gtcgacgaggacggctccgagcgcgcggttcaccgcgtcaactacggcgccaagctccac
gtggatgaaggcgacaaggtgcagcgcggccagcgtatcgccgagtgggatccctacacc
cgcccggtcatcgcggaagtcaccggtacggtggccttcgaggatctggtcgacggagcg
tccgtcacggaaacgaccgacgaggcgaccggcatcaccaagcgtgtcgtcatcgactgg
cgttcgtctccgcggacccaggacctgaagcccgcgatcgtggtcaagggtcccgatggc
gagatcctgaagccgcagcgtggcggcgaggcccgctatctgctgcatgcggactcgatc
ctctcggtcgataccgatcacaagatcaatgccggcgacgtgatggcgcgtattccgctg
gagagcgccaagaccaaggacatcaccggcggtctgccgcgtgtggccgaactgttcgag
gctcgtcgtccgaaggaccatgccatcatcgcggagatcgatggcacgatccgcttcggc
cgcgactacaagaacaagcgccgcattctcatcgagccgttcgacgagacgcaggagccc
gtcgagtatctcgttcccaaggtcaagcacttccatctgcaggaaggcgacacgatcgag
aagggcgagtatctggtcgacggcaaccccgcgccgcacgacatcctggcgatcaagggc
gtggaggcgcttgcgtcctacctcgtcaacgagatccaggaagtctaccggttgcagggc
gtgggcatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
ctcacggatgtcggcgacagcgatctgatcaacggcgaacagatcgaccgtgtcgatctg
gtggccttgaacaagcggttgaaggaagaaggcaagaagctggcttccggcaaccccgtg
ctgctcggcatcaccaaggccagcctgcagacgcggtccttcatctcggccgcatcgttc
caggagacgacgcgcgtcctgactgaagccgccgtgaacggcaaggccgatacgctcgac
gggctgaaggaaaacgtcatcgtcggccgcctgatcccggcgggcacgggcagcaccgtc
agccgcatccgcaaggttgcgaccctgcgcgacgagttgatcctcgacgaacgcaagaag
cgttcgggcgccgaggtcgcggaaccggccctgatggacctgagcgagggtgcggccgaa
tag
DBGET
integrated database retrieval system
