Bradyrhizobium sp. ORS 285: BRAD285_2625
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Entry
BRAD285_2625 CDS
T04956
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bro
Bradyrhizobium sp. ORS 285
Brite
KEGG Orthology (KO) [BR:
bro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bro03016
]
BRAD285_2625
Enzymes [BR:
bro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BRAD285_2625
Transfer RNA biogenesis [BR:
bro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BRAD285_2625
Prokaryotic type
tRNA splicing ligases
BRAD285_2625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SMX57696
LinkDB
All DBs
Position
2537205..2538545
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AA seq
446 aa
AA seq
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MRADPYKDRARELAIEAGLDPDARIERPGQRSMPLWCTFRDAARKEQLAREAEALADTVA
SRPQAAQYQNSPLKVFGTHEDATIAQMRNCMSVGNAVAGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAVRLDTPFSAIEDKVGAIIKDVSKVISFGVGRKNAERVEHELF
DDADAWRESDMGEYRQKAVGQLGTVGSGNHYVDLMRDEAGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYIAAMQLAGRYAYAGREWVVERVRQIIGGAVTD
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
YSTVHGAGRMFGRREAKRRFTRAEMDAWLQSRGVTLIGADLDESPMAYRRLPEVLAEHAG
SVKVVHTLRPFAVVMAGEGEFDPFKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgagccgatccctacaaagaccgtgcgcgagagctggcgatcgaggccgggctcgat
ccggatgcgcggatcgaacggccggggcagcgctcgatgccgttgtggtgcacgttccgc
gacgccgcgcgcaaggagcagctcgcgcgcgaggccgaggcgctggccgatacggtggcg
agccggccgcaggcggcgcagtaccagaacagcccgctgaaggtgttcgggacgcatgag
gacgcaacgattgcgcagatgcgcaactgcatgagcgtgggaaacgccgtggccggcgtg
atctgcgccgacggccatctcggctatgcccagccggtcggcggcgtgatcgcctatgag
aagcagatcagcatctccggcgtcggcttcgacatcggctgcggcaacatggcggtgcgg
ctcgacacgccgttcagcgcaatcgaggacaaggtcggtgcgatcatcaaggacgtgtcg
aaggtgatctcgttcggtgtcggccgcaagaacgccgagcgcgttgagcatgagctgttc
gacgatgctgatgcctggcgggagtcggacatgggcgagtaccggcagaaggcggtcggg
cagctcggcacggtcgggtcgggcaaccactatgtcgatttgatgcgcgacgaggccggc
ttcgtctggatcggcgtgcatttcggcagccgtggtctcggccacacctcggcgacgcgc
tacctcaaggcggccggcggcaaggacggcatgaacgtgccgcccgccgtcgtcgacgag
gactcggaggtcgggcagcgctacatcgccgcgatgcagctcgccgggcgctatgcctat
gcgggccgcgagtgggtggtggagcgcgtgcgccagatcatcggcggcgcggtcaccgac
agcgtgcacaaccaccacaactacgcctggcgtgagacccacgacgggcgcgatctgtgg
gtggtgcgcaagggcgccacgccggcctttccgggccagcgcggcttcgtcggcggctcg
atgggcgacgacgccgtcatcatcgagggcgtcgagtcggaggaggccaaggcctctttg
tactcgacggtgcacggcgccgggcgaatgttcggacgtcgcgaggccaagcgtcgcttc
acgcgcgccgagatggacgcctggctgcagagccgcggcgtcaccctgatcggcgccgac
ctcgacgagagcccgatggcctatcggcgtctgcccgaggtgctcgccgagcacgccggc
tcggtgaaggtcgtgcatacgctgcggccgttcgccgtggtgatggccggcgagggcgag
ttcgatccgttcaaggattga
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