Bradyrhizobium sp. ORS 285: BRAD285_2807
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Entry
BRAD285_2807 CDS
T04956
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bro
Bradyrhizobium sp. ORS 285
Pathway
bro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BRAD285_2807 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bro03021
]
BRAD285_2807 (rpoC)
03400 DNA repair and recombination proteins [BR:
bro03400
]
BRAD285_2807 (rpoC)
Enzymes [BR:
bro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BRAD285_2807 (rpoC)
Transcription machinery [BR:
bro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BRAD285_2807 (rpoC)
DNA repair and recombination proteins [BR:
bro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BRAD285_2807 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF2130
Motif
Other DBs
NCBI-ProteinID:
SMX57859
LinkDB
All DBs
Position
2734754..2738953
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLRGLELEKLEQTLRAEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGMPGQGMTFGNMAELEHALH
AKAIHLHSKIKYRWEGMNEEGKIAKRWIETTAGRVMLGNLLPKHPRVTFEVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPAGKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKASEEIAKEMMKEISVTKKTATGADADINSIYM
MSHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTHLGIKMRAIVDAGTLVASLGSRILGRVP
CDDVRDPATNAVLVKAGTLMEESHIDAIQQAGVQEVKIRSALTCELVNGICKMCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFEGKVVIRNKAI
ARNSEGHLIAMVRNMVVTIVDPDGSERATHRIQYGSRMHVDDGDMIKRGQRIAEWDPYTR
PILTEAEGTIGFEDLTEGLSISETLDESTGIAKRVVIDWRGTRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDIGATVEPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPVDKTEEAREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEV
TDQGDTDMISGEQVDKIEFDALNLKAQEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTGASMARIREVALKRDKLILDEREKQ
AAIVPAQPEPQPLALPPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaacccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtcgccggaaaagattctgtcctggtcctacggcgagatcaag
aagccggaaacgatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgttgtcgcgcgtccggcgc
gagcgcatgggccacattgagctcgccgctcccgtcgcgcacatctggttcctgaagtcg
ctgccgtcgcgcatcggcctgctgctggacatgacgctgaaggatctcgagcggatcctg
tacttcgaatattacgtcgtcctcgagcccggtctcaccgcgctcaaggaccgtcagctg
ctgtccgaggacgagtacctcaaggcgcaggacgaatacggccaggacagcttcaccgcc
atgatcggcgccgaggccatccgtgagctgctgcgcggcctcgagctcgagaagctcgag
cagacgctgcgtgccgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccgccactccggcaacaagccggaatggatgatc
atgaccgtcgttccggtgatcccgccggatctgcggccgctggtgccgctcgatggcggc
cgcttcgcgacctccgacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgcgcgcctgacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtggatgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggtctgtcgaccacggtcaagcaggccaag
aagctggtcgagaaggagcgtccggaggtctgggacatcctggacgaggtcatccgcgag
catccggtgctgctgaaccgcgcgccgacgctgcatcgtctcggcattcaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatccgctggtctgctcggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatcccgcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctcgatcatgcgcgaa
ggcatgcccggccagggcatgacgttcggcaacatggccgagctcgagcacgcgctgcac
gccaaggccatccatctccacagcaagatcaagtaccgctgggaggggatgaacgaggaa
ggcaagatcgccaagcgctggatcgagaccaccgcgggccgcgtcatgctcggcaacctc
ttgccgaagcatccgcgcgtgaccttcgaggtcatcaacaagctgatgaccaagcgcgaa
atctcgggcgtcatcgatcaggtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggccggcaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggtctgatcacccatggcgagaagtacaac
aaggtcgtggacgcctggtcgaaggcctcggaagagatcgccaaggagatgatgaaggag
atctccgtcaccaagaagacggcgacgggggcggatgccgacatcaactcgatctacatg
atgtcgcactccggtgcgcgtggttcgccggcccagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgagtacttcaactcgacccacggcgcccgcaagggtctcgcg
gacaccgcgttgaagaccgcgaactcgggttacctcacccgccgtctggtggacgtcgcg
caggactgcatcatcacgcaggacgattgcggcacccatctcggcatcaagatgcgtgcg
atcgtcgacgccggcacgctggtggcgtcgctcggctcgcgcatcctgggccgcgtgccc
tgcgacgacgtgcgcgatcccgccaccaacgccgtgctggtcaaggccggcaccttgatg
gaggagagccacatcgacgccatccagcaggctggcgtgcaggaggtgaagatccgctcg
gcgctgacttgcgagctggtcaacggcatctgcaagatgtgctacggccgcgatctcgcg
cgcggtacgccggtcaaccacggtgaggctgtcggcgtcatcgccgcgcagtcgatcggt
gagcccggcacccagctgacgatgcgcaccttccacatcggcggcgcggcgcagctgaac
gagcagtccttcgtcgaatcgaacttcgagggcaaggtggtcatccgcaacaaggcgatc
gctcgcaacagcgaaggtcacctgatcgcgatggtccgcaacatggtcgtgacgatcgtc
gaccccgacggcagcgagcgtgcgacgcaccgtatccagtacggttcgcgcatgcatgtt
gacgacggcgacatgatcaagcgcggccagcgcattgccgagtgggatccttacacccgc
ccgatcctcacggaagcggagggcacaatcgggttcgaggatctgaccgaaggtctgtcg
atctcggaaacgctcgacgagtccaccggtatcgccaagcgcgtggtcatcgactggcgt
ggaacgcgcggtggcgcggatctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctcaagctcgcccgcggtggtgacgcccgctacatgctgtcggtcgacgcgattctg
tcggtcgacatcggggcgacggtggagccgggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgcgacatcaccggcggtctgccgcgggtggcggagctgttcgaagcg
cgcaagccgaaggatgccgcgatcatcgctgagatcgccggcaccatccggttcggccgc
gactacaagaacaagcgtcgcatctcgatcgagccggtcgacaagaccgaggaggcgcgc
gagtacctgatcccgaagggcaagcacatccatctccaggatggcgacatcgtcgagaag
ggtgacttcatcgtcgaaggcaacccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgcggcctatctggtcaacgagatccaggaggtctaccggctccagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaagatcgaggtc
accgatcagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctgaacctgaaggcgcaggaggagggcaagaagcccgccaccggcaatccggttctg
ctcggcatcaccaaggcgagcctgcagacgcggtcgttcttctcggcggcctcgttccag
gagaccacccgcgtcctcaccgaggcggcggtcaacggcaagatcgatccgctcgagggt
ctcaaggagaacgtcatcgtcggccgcctgattccggccggcaccggcgcctccatggcc
cgcatccgcgaggtcgctctcaagcgcgacaagctgattctcgacgagcgcgagaagcag
gcggcgatcgtgccggcgcagcccgagccgcagccgctggcactgccgcccgcagagtaa
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integrated database retrieval system
