Bradyrhizobium sp. ORS 285: BRAD285_3600
Help
Entry
BRAD285_3600 CDS
T04956
Symbol
Mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bro
Bradyrhizobium sp. ORS 285
Pathway
bro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRAD285_3600 (Mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bro03400
]
BRAD285_3600 (Mfd)
Enzymes [BR:
bro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRAD285_3600 (Mfd)
DNA repair and recombination proteins [BR:
bro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRAD285_3600 (Mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SMX58572
UniProt:
A0A1Y6KFR6
LinkDB
All DBs
Position
complement(3584471..3587986)
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSPVKSPAEHLAPGRALTLANVAEGAEGLVVSDLARAIAARPKPPAVSLAVVCRDGNRM
QQLARALDFFAPDLPVMQFPAWDCQPYDRVSPHGGILAQRVTTLARLSRLAGSDKPLIVL
TTVNAIVQRVPSRDTMAGQALSVAPGHVVPMDSVVAWLEHNGYIRASTVRESGEYAVRGG
ILDLFPAGLDQPVRFDYFGDSLESIRTFDAETQRTLLDMRALDLVPVSEFQLVTDTIRRF
RMGYVAEFGAPDRDDALYEAVSEGRRYPGMEHWLPLFHDKMETLFDYLPNTPIVIEPQGE
DAARERFKQIIDYYDARREAMEHPGGGAIYKPLTVDRLYLTSTEWAERLAAAPLAKVTPF
AVPESAGVVDIGARAGRNFAPERNDAAVNVFEALVAHVQALQSVRKNVVIALWSEGSRDR
MASMLKDHKLIHVTSVNTWRMVQATPRNETMLAVLGLETGFETDQIAVISEQDILGDRLV
RPRRASRKLDNFISEVTSLGVGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAGETK
LYLPVENIELLSRYGSDQTNVELDKLGGSGWQTRKAKLKNRIREMAGELIKIAAERMLHE
APKMPVQAGLYDEFCARFPYDETEDQLAAIQATLGDLEAGRPMDRLVCGDVGFGKTEVAL
RAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLVSTKELNQVKKGL
TDGSVDIVVGTHALLGKTVKFRDLGLVIVDEEQHFGVSHKERLKQLRAEIHVLTLSATPI
PRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPVMIREALLRERYRGGQAFYVVPRI
DDLAEVKEFLDKTVPEMKVAVAHGQMAPTVIEDIISAFYDGKFDILLSTTIVESGLDIPR
ANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSTHKVSAQAEKRLGVLQSLETL
GAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAIENLKAGITEPTVDRWS
PQITIGMPVLIPEDYVSDLSVRLSLYRRLADLETDEEIENFAAELRDRFGKLPDETRYLF
KVAAIKNYCRRANVEKVDAGPKGAVIAFRDNSFAYPDRLVAFIKRHGQAAKVRPDMKVVF
LQVWETPEERLEGTTDILKELAELAEKKKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtccagtcaagtcgcccgccgagcacctcgcgccgggacgcgcgctcacgctc
gccaatgtcgccgagggcgccgaagggctcgtcgtctccgatctcgcgcgcgcgatcgcc
gcccggccgaagccgccggcggtcagccttgccgtggtctgccgcgacggcaaccggatg
cagcagctggcgcgggcgctcgacttcttcgcgccggatcttccggtgatgcagtttccg
gcctgggactgccagccctatgatcgcgtctcgccgcatggcggcatcctcgcccagcgt
gtcacgacgctcgcgcggctgtcgcgcctcgccggcagcgacaagccgctaatcgtgctg
accaccgtcaacgccatcgtgcagcgcgtgccatcgcgcgacacgatggcgggccaggcg
ctgtcggtggcgccgggccatgtcgtgccgatggattccgtggtcgcctggctggagcac
aacggctacatcagggcctccaccgttcgcgagagcggcgaatatgccgtgcgcggcggc
attctcgatctcttccccgccggcctcgaccagcccgtgcgcttcgactatttcggcgac
agcctggaatcgatccgcaccttcgacgccgagacgcagcgcaccttgctcgacatgcgt
gcgctcgacctcgtgcctgtctccgaattccagctcgtcaccgacaccatccgccgcttc
cgcatgggctatgtcgccgagttcggcgcgcccgaccgcgacgacgcgctgtacgaggcc
gtcagcgaaggccgccgctatcccggcatggagcactggctgccgctgttccacgacaag
atggagaccctgttcgactatctgccgaacacgcccatcgtgatcgagccgcagggcgag
gacgccgcgcgcgagcgcttcaagcagatcatcgactattacgacgcgcgccgcgaggcg
atggagcatcccggcggcggcgcgatctacaagccgctgaccgtcgaccggctgtatctg
acgtcgacggagtgggccgagcggctcgccgccgctccgcttgcgaaggtcacgccgttc
gccgtgccggagagcgctggcgttgtcgacatcggtgcgcgggccggccgcaacttcgcg
ccggagcgcaacgacgccgcggtcaacgtgttcgaggccttggtcgcgcatgtgcaggcg
ctgcagtcggtgcgcaagaacgtcgtgatcgcgctgtggagcgaaggctcgcgcgaccgc
atggcctcgatgttgaaggaccacaagctgatccatgtcaccagcgtcaacacctggcgc
atggtgcaggcgacgccgcgcaacgagaccatgctcgcggtgctcggcctggagaccggg
ttcgagaccgaccagatcgccgtcatctccgagcaggacattctcggcgaccgcttggtg
cggccgcgccgggccagccgcaagctcgacaatttcatctcggaggtgacgagcctcggc
gtgggcgacatcgtcgtgcacgtcgatcacggcatcggccgcttcgtcggtctgcagacg
ctggaggtcgccggcgcgccgcatgattgtctcgagctgcgctatgccggcgagaccaag
ctgtacctgccggtcgagaacatcgagctgttgtcgcgctacggctccgaccagaccaat
gtcgagctcgacaagctcggcggctcgggctggcagacgcgcaaggcgaaactcaagaac
cgcatccgcgagatggccggcgagctgatcaagatcgccgccgagcgcatgctgcacgag
gcgccgaagatgccggtgcaggctggcctctacgacgagttctgcgcgcgcttcccctat
gacgagaccgaggaccagctcgccgcgatccaggcgacgctcggcgatctcgaagcggga
cggccgatggaccgcctggtctgcggcgacgtcggctttggcaaaaccgaggtggcactg
cgcgcggcgtttgcggtcgcgctcgacggcaagcaggtcgccgtcgtcgtgccgaccacc
ttgctcgcgcgacagcatgccaagaccttcaccgagcgcttcaagggctttccggtcaac
gtcgcgcaggcctcgcgcctcgtctccaccaaggagctcaaccaggtcaagaagggcctc
accgacggctcggtcgacatcgtcgtcggcactcacgcgctgctcggcaagaccgtcaag
ttccgcgacctcggcctcgtcatcgtcgacgaggagcagcactttggcgtcagtcacaag
gagcggctgaagcagctgcgcgccgaaatccacgtgctgaccttgtcggcgacgccgatc
ccccgcacgctgcaacttgcgctgacgggtgtccgcgagctgtcgatcatcgcctcgccg
ccggtcgatcgtctcgccgtgcgcaccttcgtcgcgccgcatgatccggtgatgatccgc
gaggcgctgttgcgcgagcgctatcgcggcggccaagcgttctacgtcgtgccgcgcatc
gacgatctcgccgaggtcaaggagttcctcgacaagactgtgccggagatgaaggtcgcg
gtcgcccacggccagatggcgccgaccgtgatcgaggacatcatctcggcgttctacgac
ggcaagttcgacatcctcctgtcgaccacgatcgtcgaatccggcctcgacattccccgc
gccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctatcagctg
cgcggccgcgtcggccgctccaagctgcgcgcctatgcgctgttcaccctgccgtcgacc
cacaaggtcagcgcgcaggcggagaagcggctcggcgtgctgcaatccctggagacgctc
ggcgcgggcttccagctcgccagccacgacctcgacatccgcggcgccggcaatctgctc
ggcgacgagcagtcaggccacatcaaggaggtcggcttcgagctctaccagtcgatgctg
gaggaggcgatcgagaacctcaaggccggaattaccgagccgaccgtcgaccgctggtcg
ccgcagatcaccatcggcatgcccgtgctgattccggaggactacgtctccgacctctcg
gtgcggctgtcgttgtaccgccggctcgccgatctcgagaccgacgaggagatcgagaat
tttgccgccgagctgcgcgaccgcttcggcaagctgccggacgagacgcgctatctgttc
aaggtcgccgcgatcaagaactactgccggagagccaatgtcgagaaggtcgacgccggc
ccgaagggcgccgtcatcgccttccgcgacaacagctttgcctatccggatcgcctcgtc
gccttcatcaagcgccacggccaggccgccaaggtgcgccccgacatgaaggttgtgttc
ctgcaggtgtgggagacgccggaggagcgcctcgaaggcacgacggatattctgaaggag
ctggcggagctcgcggagaagaagaaggcggcgtaa
DBGET
integrated database retrieval system
