Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_02350
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Entry
IPI25_02350 CDS
T07026
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPI25_02350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
broc03019
]
IPI25_02350
03009 Ribosome biogenesis [BR:
broc03009
]
IPI25_02350
Enzymes [BR:
broc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPI25_02350
Messenger RNA biogenesis [BR:
broc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPI25_02350
Ribosome biogenesis [BR:
broc03009
]
Prokaryotic type
rRNA helicases
IPI25_02350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQR67099
LinkDB
All DBs
Position
complement(500353..501927)
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AA seq
524 aa
AA seq
DB search
MKKLDTFRALGLSENTLQALEKKGFEEPTPIQQKTIPILLKGEVDIIGQAQTGTGKTAAF
GLPILEKIPEKTKTVQALILVPTRELAIQVSEELNSFKGGKILQIMPIYGGQSMEEQLRR
LKKGIDVVVGTPGRILDHLRRKSIRLSHISYLVLDEADEMLNMGFIDDVEEIIRNTGEQR
RMLLFSATMPGKIISIAEKYMRNYEMVGVKKEQLTTSLTDQIYFEVAPSDKFDALCRIID
IEHEFYGLIFCRTKIDVDNLANRLIERGYDAEALHGDISQNQREIVLNKFRKQRINILVA
TDVAARGIDIQNLTHVINYSLPQDPESYIHRIGRTGRAGKEGTAITFVTHDEYRRLILIK
KIAKTDIRKEKLPRIEDVIHQKKSRIKTEISQIITSENMNGYVQLAQEMLKENEAEKVLA
ALLKHTFQDELDENNYNEIRDVSIDRKGTTRLFVALGKIDGMTPRKLVTFIKQQAKVHSE
KIKNVQIFDKFSFITVPFEEAEIMLNIFKKKMNGKKPIVERAKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattagatacattcagggcactgggattatcagaaaacacattacaagcattg
gaaaaaaagggttttgaagagcccactccaattcagcaaaagacaatcccaattctcctc
aagggagaggtagatatcatcggacaggcccagacaggaacaggaaaaacggctgcattt
gggctccccatactcgaaaagataccagaaaaaacaaaaactgtccaggcgctgattctt
gtgcccacgagagaactggccatccaggtatcagaagaattaaactcctttaaaggaggc
aaaattctgcagatcatgcccatctacgggggccagtcgatggaagaacagttgagaagg
ttgaaaaaagggatagatgtcgtagtcggaacccccggaagaatactggatcatctcagg
agaaaaagtatacgcctgagtcatatatcgtatttggtccttgacgaagcggatgagatg
ctcaatatgggatttattgatgacgtagaagaaattataagaaataccggtgaacagcgg
aggatgctgctcttttccgctaccatgccgggaaaaatcataagcatcgcagaaaaatac
atgagaaactatgagatggtcggggtaaaaaaagagcagcttaccacaagcctgacggat
cagatctatttcgaagtggcgccttcggataaatttgatgcattatgcaggatcatcgat
attgaacatgaattctacggcctcatattttgcaggacgaagattgatgtggacaatctt
gcaaacaggcttatagaaagagggtatgatgcagaggcactgcatggcgatatatctcaa
aaccagcgggaaattgtcttaaacaagtttcgaaaacaacggataaatattctggtagct
acggacgttgccgccagaggcattgatattcaaaacttaacgcatgtcatcaattattcc
ctgcctcaggacccggaatcgtacatccacaggataggaagaactggccgagccggaaag
gaaggaaccgctattacgtttgttacgcatgatgaatatagacggctcatcctgattaaa
aaaattgcaaaaacagatatccggaaagaaaaactgccgagaattgaagatgtaatacat
caaaaaaaatccaggataaagacagaaatttcccagatcattacctcggaaaacatgaac
ggatatgtacaacttgcacaagaaatgctcaaagaaaacgaggcagaaaaggtcctggca
gcccttttaaaacatacttttcaggacgaactggatgaaaataattataatgaaatcaga
gacgtttctattgacagaaaagggacgacacgactctttgtagcgctgggaaaaatcgat
ggtatgacgcccagaaagttagtaacatttatcaaacaacaggccaaagttcatagcgaa
aagattaaaaacgttcagatatttgacaaattttcctttataacggttccctttgaggaa
gcggaaattatgttaaatattttcaagaagaagatgaacggcaaaaaacctatcgttgaa
cgcgcaaaaagataa
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