Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_04015
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Entry
IPI25_04015 CDS
T07026
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPI25_04015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
broc03019
]
IPI25_04015
Enzymes [BR:
broc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPI25_04015
Messenger RNA biogenesis [BR:
broc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPI25_04015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Peptidase_C21
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQR67395
LinkDB
All DBs
Position
complement(853132..854463)
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AA seq
443 aa
AA seq
DB search
MNFKSFHFHPHIAAGVQAAGYTTPTPVQLQSIPPILQGHDIMALAQTGTGKTAAFVLPIL
QRLMQGQRGRLRALIIAPTRELAEQIHDTIGEMGGQTGLSSVTIYGGVAINPQIQKLRSG
AEIAVACPGRLLDHIRQGTINTSTIEILVLDEADRMFDMGFLPDVRKILRHLPAQRQTLF
FSATMPSDIRHLAHDILRTPVTIQIDHTVPLTTVSHALYPVDQHLKTAMLMEILHHTDTE
SVLVFTRTKHRARQIARHLGKAGYRATSLQGNLSQNQRQAALDGFRDGSFKILVATDIAA
RGIDVSQISHVINYDIPDTAEAYTHRIGRTGRASKTGDAFTLITREDASMVRTIENALGV
KLERRTLKNFNYNAPAQKTASSHHQTQQSHKQTTARRTRQKTTVFGSTTRSASTSGVKKR
SHPHFFSVTNSSTRKSHPSRGAH
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttaaatcatttcatttccatccgcacattgcggctggtgtgcaggcggccggg
tacactactcccacgcccgtacaacttcaatctattccgccgattcttcagggacatgat
attatggccctggctcagaccggaaccggcaaaaccgctgcatttgtgttaccgatttta
cagcgtttgatgcaagggcaacgcggacgtcttcgcgccctcataattgcacccacgcgt
gagctggcagagcaaatacatgacacgatcggagaaatgggcgggcaaacaggattaagc
agcgttactatttatgggggtgtggctataaacccacaaatccagaaactgcggagcggt
gcggaaattgccgtagcatgccccggtcgtctcctcgaccatatcagacagggcacgatc
aatacatcaacgatagaaattctcgtgctggatgaggcagaccgcatgttcgacatgggc
tttctgcccgatgtacggaagatattacggcacctgccggcgcagcggcagacactgttt
ttctcggctacgatgccttccgacatccggcatctggcacatgacatcttgcgcactccg
gttactatacaaatcgaccacaccgtaccattaaccaccgtctcacatgcgttatatccg
gtcgatcaacacctgaaaactgcaatgctgatggagattttgcaccacaccgatacagag
tctgtactcgttttcacccgtaccaagcatcgcgccagacagatagcgcggcacttagga
aaagcgggctaccgtgcaacctcgctgcagggtaatttatcgcaaaaccagcgacaagcc
gcactcgatggtttccgtgacgggtcttttaagatactggtggcaaccgatatcgctgct
cgtggtatcgatgtttcgcagatctctcatgtaattaactacgacatacccgataccgcc
gaagcctatacccatcgcattggccgtaccggccgtgcaagcaaaaccggagatgctttt
acgctcattactcgggaagacgcctctatggtgcgcaccatagagaatgcccttggtgtt
aagctggaacggaggaccctgaagaacttcaactacaatgcacctgcgcagaagacggca
tcttcgcatcaccagacacagcaaagccataaacagactacagcacggcggacaagacaa
aaaacaaccgttttcggctctacaacccgatcggcttcaacctcaggggtaaaaaaacgg
agccacccgcattttttctctgtgaccaattcctcaacacgcaagtctcatccttcgcgc
ggtgcacattga
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