Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_06275
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Entry
IPI25_06275 CDS
T07026
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPI25_06275 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
broc03019
]
IPI25_06275 (pnp)
03016 Transfer RNA biogenesis [BR:
broc03016
]
IPI25_06275 (pnp)
Enzymes [BR:
broc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IPI25_06275 (pnp)
Messenger RNA biogenesis [BR:
broc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IPI25_06275 (pnp)
Transfer RNA biogenesis [BR:
broc03016
]
Prokaryotic type
tRNA degradation factors
IPI25_06275 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QQR67794
LinkDB
All DBs
Position
complement(1340238..1342325)
Genome browser
AA seq
695 aa
AA seq
DB search
MTYCRVEKLIGKEMLIIETGKIAKQANGAAVVRYGDTIVLTTAVSSAEENDEADFFPLTV
DYREKTYAAGKFPGGFFKRDGRPTSKEILTMRLIDRPIRPLFPETYLREVQIMSMVLSAD
KENDPDILAMIGASAALSVSCIPFGGPTGSVRVGQVDGEFIVNPTHSELEKSMIDLVVSG
TEDAVTMVEASGKEVSEEQMVDAIMFGHAYIKEIVQVQKELLAKCGKVKQPIPLLKLDMN
LLDEIKQKYYTEILEKNQTPGKDSRKRALHEILNQIIQEYCTEKEGAPTRKAIKAIFERL
ETIIVRDQIVQEKKRPDGRGLKDIRPITCEVGILPRTHGSALFTRGETQAIVVTTLGTTM
DEQRVDTLEEEYSKKFMLDYNFPPFCVGEVKPLRGPGRREIGHGALAERALEAVLPPLTT
FPYTIRIVSDITESNGSSSMATVCGGTLSMMDAGIPIATQVAGIAMGLVKEDEDVCILSD
ILGTEDHLGDMDFKVAGTLKGVTALQMDIKISGITEKIMRDALVQAKEGRIYILQELAKV
IDKPREEISVYAPKLVHIKINPEKIGMVIGPGGKNIKKIQEETGAKVEIQDDGTVIISSI
LAESSQKAKIWIERMTEDVQVGKTYMGKVLSLKEYGAFVEIIPGHDGLVHISELSDGYVE
KVEDVVKVGQEIKIKVIGIDDQKRVKLSRKAALKE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgacgtattgtagggtcgagaaattgatcggcaaagagatgcttattatagaaacagga
aaaattgcaaagcaggctaatggcgcagcggtagtaaggtatggcgatacgatagtattg
actacggcagtatcatcagcagaagaaaatgacgaagcggattttttcccactcaccgtt
gattatcgggaaaagacatacgcagcaggaaaattccccggcggcttctttaaaagagat
ggcaggccaacctcaaaagaaatattaaccatgaggttaatagatcgccccataagacca
ctctttccggaaacatatcttcgtgaagttcagatcatgtccatggtgctttctgcagac
aaagagaacgatcctgacattcttgctatgataggggcatctgcagccctatcggtgtca
tgtattcctttcggagggcctacaggttctgttagggttggtcaagtcgacggagagttt
attgtaaatcctacgcattccgagcttgaaaaaagtatgatagatcttgttgtttccgga
actgaagatgcggttaccatggttgaggcatcaggtaaagaggtttctgaagaacagatg
gtggatgcaattatgttcggacatgcctatataaaagaaatagttcaagtacagaaagaa
ctgttggccaaatgtggaaaagtaaagcaacccattccacttttgaaacttgatatgaat
ctcctggatgaaattaaacagaaatattacacagaaatattagagaaaaaccaaacgccg
ggtaaagattctagaaaacgagcattgcatgaaatactgaatcagattatacaggagtat
tgtactgaaaaagaaggtgctcctacaagaaaagcaattaaggctatttttgaaagactt
gagactatcatagtgcgtgaccaaattgtgcaggaaaagaaaaggccggatggcagaggg
ctaaaagatattcgccccattacctgtgaagtggggattttgccaagaacccatggctcc
gcgttgttcacacgaggtgagacccaggctattgtggttacaacactgggtacgacaatg
gatgaacagcgagtagatactcttgaggaagaatattcaaagaagtttatgttggattat
aatttcccgcctttttgcgttggtgaggtgaaaccattgcgtgggccaggtagacgtgaa
attggtcatggggctttggcagaacgggcattagaagcagtgcttcccccgctaacgact
tttccctacacgatacgaattgtttctgatattaccgaatccaatggatcctcttcaatg
gctacggtttgtggtggaactctttccatgatggatgctggtattcctattgctacgcag
gtggctggtatcgcaatgggcctggtgaaagaggatgaagatgtatgtattctgtctgat
attttagggacagaagatcacctgggtgatatggattttaaagttgccggaacattgaaa
ggtgttaccgcactccagatggatataaagatttcaggaattactgaaaaaattatgcgg
gatgcattggtgcaggctaaagaaggaagaatttacattcttcaggaactggcaaaggtt
atcgataaaccaagggaagaaatttccgtgtatgcgccgaaattagtgcatattaagatc
aatcctgaaaaaatcgggatggtcatcggtccgggtggaaaaaatattaaaaaaatacag
gaagaaaccggcgcaaaggtagagatacaggacgacggtacggttattatttcgtcgatt
cttgccgagtcatcacaaaaggcaaaaatatggattgaacgcatgacagaagatgtccag
gtagggaaaacttatatgggaaaagttctttctttaaaagagtatggtgcttttgtggaa
attatcccggggcacgatggactggtacatatttctgaattgtctgatggctacgttgaa
aaggtcgaagatgttgtaaaggttggtcaagaaattaaaataaaagttatcggaatagat
gatcaaaaaagggttaagctaagccgaaaagctgcattgaaagaatag
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