Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_10650
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Entry
IPI25_10650 CDS
T07026
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IPI25_10650 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
broc03021
]
IPI25_10650 (rpoD)
Transcription machinery [BR:
broc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IPI25_10650 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
HetR_C
CARD
Motif
Other DBs
NCBI-ProteinID:
QQR65998
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All DBs
Position
2335456..2337108
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AA seq
550 aa
AA seq
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MESLNQKIKQLVQKGKEKGYLTYEELNDILPDDADISPEKIDDILMMLDELGIDLIDETE
IESRDVIETEEGEPYPEVELEFGEVPTITEKIDDPVRMYLTQMGEIPLLTRDEEIMLAKK
IEITRKRFLKKVLHSDLSLATCLRILEDVNNGELSFDRTLKVNAMVDNCKDEILEQFPRS
AKILKSLLQKNKEDYLRVKRKQISRKERIKLLRTIRNRRRKGIDLLEEINIRTKRIQPML
KRLQEIIFEMEFLESQMTESKQRSRSNGYYKELELQFAKLEELVLESSNSLKRRVGSVEN
IYKEHETAKRKLSGANLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETMSKIRNVSKKLLQEKGREPTIEEIAREV
KITVGEARRVLKISRHQISLDRPVGESEDSSFGDFIEDEKAESPVSAATQEMLKDKIESV
LETLTYREREIIKLRYGIGDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKL
EGFLDGVSAD
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtttaaatcaaaaaattaagcaactggtacaaaaaggtaaggaaaagggctat
ttaacttacgaagaactgaatgatatcttgcctgatgatgcggatatttcccccgagaag
attgatgacatcttgatgatgctggatgaattaggcatcgacttgatcgatgagactgag
attgaaagtcgcgacgttattgaaaccgaagagggtgaaccctacccggaagttgaatta
gaatttggcgaagttccaaccatcaccgaaaagatagatgacccggttcgtatgtacctc
acgcaaatgggtgaaattcctttgcttacccgtgacgaagaaatcatgcttgcgaaaaaa
atagaaattaccagaaagagatttttaaagaaagtcctgcattctgatctttccctggca
acctgcttgagaatattagaggatgtcaataatggagaattatcgtttgaccgtaccttg
aaagtgaatgcaatggttgacaattgcaaggatgagattttagaacagtttccacggagt
gctaaaatattaaaatccctcctccaaaagaataaagaagactatctccgggtaaaacgg
aaacaaatttccaggaaggaaagaataaaacttctccgaacgatcagaaacagaaggaga
aaagggatagatctgctcgaagaaatcaatattcgcacaaaacgaatacagcctatgttg
aaaagactccaggaaatcattttcgaaatggaatttttagaaagccagatgacagaatca
aaacagcgctcccgttccaatggttattacaaagaattagaattacaattcgcaaaatta
gaagaattggtcctggaatcttcaaacagtttaaaacgacgcgtaggctccgttgaaaac
atttataaagagcacgagactgccaagagaaagctttccggtgcaaatctccgacttgtc
gtaagcatagcaaaaaaataccggaatcgcggactcagttttctcgatttgattcaggaa
ggaaatactggtctcatgcgggcagttgataaatatgaataccggcgcggatacaaattc
agcacatacgctacgtggtggatacgtcaggcaattacgcggtcgattgcagatcaggca
agaacgatacgcatccctgtgcatatgattgaaaccatgagtaaaataagaaatgtctct
aagaaactgctccaggaaaaaggtcgtgaaccaaccattgaagagattgcaagagaagta
aagattaccgtgggagaggcacggcgcgttcttaaaatatcccgccaccaaatctcgctg
gaccgacctgttggcgagagcgaagacagctcctttggtgattttattgaggatgaaaag
gcggaatcgcctgtgtctgcagcaacccaggagatgcttaaagataagattgaaagtgta
ttagagacgttaacgtaccgcgaaagagagattattaaactccggtacggtattggtgat
ggctatacctataccctcgaagaagttggcaaaatatttaaagttacacgggagagggta
cgacagattgaagcgaaagccgtacggaaattgcaacatccgattagaagccggaaactt
gaaggatttttggacggtgtcagtgctgattga
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