Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_12260
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Entry
IPI25_12260 CDS
T07026
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPI25_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
broc03019
]
IPI25_12260
03009 Ribosome biogenesis [BR:
broc03009
]
IPI25_12260
Enzymes [BR:
broc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IPI25_12260
Messenger RNA biogenesis [BR:
broc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IPI25_12260
Ribosome biogenesis [BR:
broc03009
]
Prokaryotic type
rRNA processing factors
IPI25_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
a_DG1_N2
Motif
Other DBs
NCBI-ProteinID:
QQR66275
LinkDB
All DBs
Position
complement(2738483..2740003)
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AA seq
506 aa
AA seq
DB search
MDKKMLINAVEPEECRIAILENNILEELYIERSSRGQIAGNIYKGRVVNIEPSIEAAFVD
IGLKKNGFLHASDVLIPSENGSQSSDTDAHGKPHREFRKIRDLLHPGKEVLVQVTKESIG
TKGPSLTTYISLPGRFLVLTPDVPRHGVSRKIASDEERLRLKKILAGLTPPANIGFIIRT
AGEQQTKKEIHKDFHYLLKLWKNIEKQTKDVKAPATIYQESDLVIRAIRDIFSTNIQEII
VDTEAVYGRTRDFLRMIMPKSEKLLTLYSEDKPLFHKYNIEQEIEAINCRKIRLPRGGSI
VIEQTEALVAIDVNSGKFKEECDPEETAFKTNLKAAKEIARQIRLRDLGGVIVIDFIDMR
TESHIHAIEKVVTDALKRDKARTKMLKMSKFGTIELTRQRIRSSLRDVLFEECKFCGGTG
YAKTVESLCLNVMRDLKFAIHSSQIAKIEIAANPAVANYLQNQKRKQMIEIEESYNKKIH
IFSTANHEYGKIDIRYLNQKDEPVEI
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggataagaagatgcttattaacgcagtagaacctgaagaatgccgaattgctatttta
gaaaacaatattttggaggagctctacattgaaaggagttcccgcggacagattgcggga
aatatttataaaggaagagtcgttaatattgagcctagtatcgaagcagcatttgtggat
atcggactcaaaaaaaacggatttctccatgcatcagatgttttaataccgtcagaaaac
gggagccagtcatctgatactgatgctcatggcaaaccgcatcgggaatttcgcaaaata
cgggatcttctgcatccgggcaaagaggtgctggttcaggtaacaaaagaaagtattggc
actaagggccctagtcttacaacgtatatcagcctgccaggcagattcctggttttaacg
cccgatgttccgcgtcacggagtttccaggaaaattgcaagtgatgaggagcggctaaga
ttaaaaaaaattcttgcaggattaacaccccccgcaaatattggctttattatacgaaca
gcaggagaacagcagacaaaaaaagagatccacaaagactttcactatctcttaaagctc
tggaagaatatagagaaacagacaaaagacgtcaaagcccctgctaccatttaccaggaa
agtgatctggttattcgcgctattcgggatattttttcgacaaacatacaagaaatcatc
gtggatacggaagctgtttatggaagaacccgtgactttcttcgtatgattatgcctaaa
tctgaaaagctgttaaccctctatagcgaggataagcctctatttcataaatataatatt
gaacaagagattgaggcaataaactgtagaaaaatccgtttgcctcgtggaggctcaatt
gttattgaacagaccgaggcattggtggcaattgatgtcaatagtggtaaattcaaagag
gagtgcgatccggaagaaacggcctttaagacgaatctcaaagcagccaaggaaattgca
cgccagatccggctgcgagacttaggcggtgtgattgtaattgactttattgacatgaga
acagaatcgcatattcatgctatcgaaaaggtcgttacggatgcgttgaaaagagataag
gcgagaacaaagatgctcaagatgtcgaaatttggcaccattgaacttacccggcaacgg
attcggtcaagtcttcgggatgttctttttgaagaatgcaagttttgtggcggtacggga
tatgctaaaaccgttgagagcctttgcttaaatgtcatgagagatctgaagtttgctatc
cattcatcacaaattgcgaaaattgagattgctgcgaatcccgcggttgcaaattacctg
caaaatcaaaagagaaaacagatgatagagattgaggaatcttataataaaaagatacac
atttttagcacagcgaatcacgaatacggcaagatcgatattcgttatttaaaccagaaa
gacgaacctgttgagatctaa
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