KEGG   Bacillus rossius redtenbacheri: 134531240
Entry
134531240         CDS       T09888                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
bror  Bacillus rossius redtenbacheri
Pathway
bror03013  Nucleocytoplasmic transport
bror03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bror00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134531240
  09122 Translation
   03013 Nucleocytoplasmic transport
    134531240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bror03019]
    134531240
   03041 Spliceosome [BR:bror03041]
    134531240
Messenger RNA biogenesis [BR:bror03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     134531240
Spliceosome [BR:bror03041]
 Complex C
  Other components
   EJC/TREX
    134531240
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134531240
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N Beta-prop_EML eIF2A WD40_MABP1-WDR62_1st Tricorn_2nd DSE1_N Beta-prop_HPS5 RMC1_N NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_SCAP CFAP251_N Beta-prop_SPT8 PAC11 PD40 WD40_RFWD3 Beta-prop_WDR75_1st PROPPIN Beta-prop_VPS8 Beta-prop_NUP159_NUP214 baeRF_family5 Beta-prop_Nup120_160 Tricorn_N TRM82_WD
Other DBs
NCBI-GeneID: 134531240
NCBI-ProteinID: XP_063222998
LinkDB
Position
3
AA seq 322 aa
MDSSSSSIEELQAYFKTHNKIREYQAHASKVHSVGWSCDGRRLASGSFDKTVVIFFLEKD
RLTREFTFKGHGGSVDQLSWHASNCDLLSTASGDKSVRIWDARSQKCAATILTKGENINI
SWSPDGNTIAVGNKEDLVSFIDTRMHKIKAEEQFNFEVNEISWNKKNNLFFLTNGQGCIH
ILSYPELKLLHILKAHPGTCICIEFDPTGRYFATGSADALVSLWDVDELACLRTFNRLEW
PVRAISFSHDGLLLASASEDLVIDVGEVATGERVADFSVEAATFTVAWHPSQYLLAYACD
DKDSYDRKRDAGSLKVFGFPSD
NT seq 969 nt   +upstreamnt  +downstreamnt
atggattcgtcttctagtagcatagaagagctgcaagcatacttcaaaacacacaacaaa
attagagagtatcaagctcacgcatcgaaagtgcactcagtgggttggagttgtgacggc
aggcgacttgcgtcgggatcgtttgacaagacagtggttatatttttcttggaaaaggat
agactgacgagagagttcacgttcaagggccacggaggaagtgtggatcagctgtcgtgg
cacgcctcgaactgcgacctgctgagcactgccagcggtgacaagagcgtcagaatatgg
gacgccaggtcccagaagtgcgctgccaccatcctcactaaaggagagaacataaacatt
tcatggtctcccgatggcaacaccatagctgtgggcaacaaagaagatcttgtctcattc
atcgacacccgcatgcataagatcaaggcagaagagcagttcaactttgaagtgaacgag
atatcgtggaacaagaagaacaacttgttcttcctaacaaatgggcaaggctgtatccac
attctgagctacccagagctgaagctgttgcacatccttaaagctcatcctggcacttgt
atctgcatcgagttcgaccccaccggtcgctattttgcaactggctctgcagatgcgctc
gtctcactttgggatgttgatgagttggcttgtcttcgcacctttaacaggctggagtgg
ccggtgagagccatcagcttcagccacgacggcctcctgctggcctcggcgtccgaggac
ctggtgatcgatgtgggcgaggtggcgacgggcgagcgggtggcagacttctccgtggaa
gcggcgaccttcaccgtggcgtggcaccccagccagtacctgctcgcctacgcctgcgac
gacaaggactcgtacgaccgcaagcgcgacgccggcagcctcaaggtgttcggcttcccg
tccgactga

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