Bacillus rossius redtenbacheri: 134533445
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Entry
134533445 CDS
T09888
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror04512
ECM-receptor interaction
bror04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134533445
04518 Integrin signaling
134533445
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bror00536
]
134533445
Glycosaminoglycan binding proteins [BR:
bror00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134533445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
134533445
NCBI-ProteinID:
XP_063227037
LinkDB
All DBs
Position
6:55196350..55305053
Genome browser
AA seq
1624 aa
AA seq
DB search
MRAPPLLLLLAAALLLLPPPGAARRPRRRERPQAQQAGPGANGDDYEEGYDDYDTEYEYG
VDETEKSTTLAVPTTTTSTTSTSTTTERPRPTPRRTPPPPPPPDRGEAAPPPAPRPAPQR
PKPPQPFVPPPTVPPAPPPEPASRVVPPERKEARACTFEGRRYGDQEEWSPDDCTSCQCL
RGRVECSHRQPCASGGGCEGIVCQELDCASNQIVPLGQCCPVCLETEEETEPPPEHTVLP
TNPNPNAGEGPIAASGVDAIGLPGPRGDSGIPGEPGRPGESGIPGQPGTPGIPGSPGPPG
IAPDVSSYYQQLALSQSSGDKGPTGLAAGLYPPESYGYLQAQVGPVGPRGPPGPPGPPGP
QGFQGTRGEPGDSGPQGAPGPIGPRGLPGPSGKDGDSGEDGEAGMPGAAGPPGPRGLPGM
PGIPGIKGHRGFPGLDGAKGEQGASGEKGSSGASGPMGPVGPMGSAGPRGERGREGPPGP
PGLRGIDGISGPPGAPGSIGKPGPPGFPGNPGIKGDQGAIGPKGSQGLQGPRGESGRPGQ
PGDSGAQGPPGRDGSPGEKGSPGAQGLSGGPGFPGSRGPPGVSGSPGQPGVKGSPGTPGE
RGYKGEAGARGEAGTPGPRGLPGTPGAEGKRGKRGIRGSTGPSGPPGERGVSGARGLPGP
DGPPGAKGQTGDRGPLGPQGNKGSQGEPGRPGSPGLQGLRGVQGRTGSPGKPGLPGERGI
QGADGKPGEQGPQGLQGLPGPIGMSGDKGLPGEQGRDGEPGPTGPAGPRGDSGKDGSPGS
QGSPGPPGSDGERGAPGPVGPRGFQGLPGAPGNPGSAGKDGEPGVQGAAGVPGSSGPRGE
RGFPGERGPVGSPGATGPRGEPGSQGQDGPPGPPGFKGDKGHAGPSGLVGLQGLRGEAGL
PGEKGERGTTGPAGPEGPPGRQGDRGAQGEMGPAGPPGEPADRGDPGPPGPPGEAGAPGG
PGERGPIGPQGLLGFPGPQGPAGQAGPKGERGFNGNKGEQGSPGLQGTPGEQGSPGRVGL
TGAKGARGEPGARGESGIMGAPGRPGEPGLAGLPGSIGAPGPMGSPGIKGSAGDAGRPGN
QGPPGQAGAPGPEGPKGDSGSEGPTGPAGQPGPQGPAGDRGLPGLPGSAGPAGSRGVRGA
TGETGPPGKAGSEGPPGPPGVSGPPGQPGQPGEQGPEGPSGKSGPPGIAGRPGDKGPIGP
SGAPGQQGQPGMPGPPGASGPSGSPGERGQKGESGPQGVDGLQGARGKPGPSGPEGLKGE
RGEPGPGGAKGHRGLMGLQGLPGAIGMPGDRGFPGPAGPPGKDGEPGPKGMSGRDGSPGQ
PGLNGPPGPRGPQGEEGRPGPPGGSGPPGPPGPPGDAMGLGYDYAALSALLNQGQSKGPD
PLSGDEPVRVFGKEITEEERRQLVTQAYQHLKTSFERFKRPDGQRSSPAKTCRDLAVAHP
ELPSGEYWIDPNEGDDRDAILVQCEIAERKTCILPSPARTPEMNYIGQEPEVWVGEISGG
MKLTYKADSNQLGFLQLLSSGAAQNLTYHCRNSVAYYDEAKHTYRRGMKLLTWNDAEITP
RGNHRLRYEVKDDGCRYKSNQWAKTVVSYSTDKTSRLPIVDVALRDVGHESQKFWLELGP
VCYS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgagggcaccaccgctgctgctgctgctggcggcggcactgctgctgctgccgcccccg
ggggccgcgcgccgcccccgccgccgcgagcgcccgcaggcccagcaggccgggcccggc
gccaacggcgacgactacgaggagggctacgacgactacgacaccgagtacgagtacggc
gtcgacgagactgagaagtccaccactctcgctgtgcccaccaccaccaccagcaccacc
agcaccagcaccaccacggagcggcctcggcccaccccgaggcgcaccccgcccccgccg
ccgccgccggaccgaggggaggcggcgccgccgcccgcccccaggccggcgccgcagagg
ccgaagccgccgcagcccttcgtgccgccgcccaccgtgccgccggcgccgcccccggag
cccgcctcccgcgtggtgccgcccgagaggaaagaggcgcgcgcgtgcaccttcgagggc
cggcgctacggcgaccaggaggagtggagccccgacgactgcaccagctgccagtgcctg
cgaggccgcgtcgagtgctcccaccggcagccgtgcgcctcagggggaggctgcgaaggc
atcgtgtgccaggagctggactgcgcctccaaccagatcgtgccgctgggccagtgctgt
cctgtgtgcttggagaccgaagaagagacagagcctcctcctgagcatacagtgctgcct
acgaaccccaaccccaacgcaggagaaggacctatcgccgccagcggagtggacgccatc
ggcttgccaggacctcggggtgactcaggaataccaggcgagccgggccgaccaggggag
tcaggaattccaggacaaccgggcacgcctggaattccaggcagtccaggcccgccaggg
atagctcccgacgtgtcgtcctactaccagcagctggcgctgtcgcagtcgtcgggcgac
aagggccccactgggctggcggcgggactctacccgcccgagtcgtacggctacctgcag
gcgcaggtgggccccgtcgggccccgcggacctccaggtccgccgggcccgccgggaccg
cagggcttccaggggaccaggggcgagcccggggactcgggcccgcaaggagccccgggc
cccatcgggccgcgcgggctgccgggaccgtcgggcaaggacggcgactcgggcgaggac
ggcgaggcgggcatgcccggggcggcgggcccgccgggccccaggggcctgccgggcatg
ccgggcatcccgggcatcaagggccaccgggggttccccggcctggacggcgccaagggc
gagcagggcgcgtcgggcgagaagggctccagcggcgcctccggccccatgggacccgtc
ggcccgatgggctccgctggaccgcgcggcgagaggggccgtgagggcccgccgggacct
ccagggctcagaggcatcgacggcatctcgggacctccgggagccccgggttctatcggc
aagccaggacctccgggatttcctggaaatcctggaataaaaggagaccaaggagcgatc
ggtcccaaagggagtcagggtctgcaaggaccacgaggcgagtcgggccgcccggggcag
ccgggcgactcgggggcgcagggcccgcccggcagggacggctcccccggcgagaagggc
agtccaggggcgcagggcctgagcggcggcccgggattccccgggtccaggggcccgccg
ggggtatccggcagcccgggccagcccggcgtcaagggcagtcccggcacgcccggcgag
cgtggctacaagggcgaggccggcgcgcgcggcgaggcgggcacgccgggtcccaggggc
ctccccggcacgccgggggccgaggggaagcggggcaagcggggcatcaggggctccacg
ggccccagtggcccgccgggcgagaggggcgtgtcgggcgccaggggcctgccgggccca
gacggaccgcccggggccaaaggacaaactggcgaccgaggtcctttgggaccccagggc
aacaagggctcgcaaggagaaccaggacgaccaggatcaccaggactccagggcctgagg
ggcgtgcagggccgcacgggctcgccgggcaagccagggctgccgggggagaggggcatc
cagggcgccgacggcaagccgggcgagcaaggaccgcagggcctccagggactgcccggg
cccatcggcatgtcgggagacaagggactgccgggcgagcaagggcgcgacggggagccg
ggaccgacgggaccagccgggcccagaggggactcgggcaaggacggctcgccggggtcg
cagggcagcccgggcccgccgggctccgacggcgagcggggggctccgggtcccgtgggc
ccgcgaggcttccagggcctgcccggcgcgccggggaacccgggcagcgccggcaaggac
ggcgagccgggggtgcagggagcggccggcgtgccgggctccagcgggcccaggggcgag
cgggggttcccgggcgagcgcgggcccgtggggtcgccgggggcgacggggcccaggggc
gagccggggtcgcagggccaggacggcccgccgggtccaccaggattcaaaggcgacaaa
ggacatgcaggaccttcgggtttagtgggtctgcaaggactgcgcggggaagccggactg
ccgggagagaagggcgaaagaggcaccaccggacccgcgggtcccgaaggcccacctggg
cggcagggcgaccgcggcgcgcagggcgagatggggccggcgggcccgccgggcgagccg
gcagaccggggcgaccccggcccgcccgggcccccgggagaggccggcgcccccggcggt
cccggcgagcggggccccatcgggccgcagggcctgctgggcttccccgggccgcagggt
cccgccggccaggccgggcccaagggcgagcgcggcttcaacggcaacaagggcgagcag
ggcagcccgggcctgcaaggcactccgggcgagcaggggtcgccgggccgcgtggggctg
accggagcgaagggcgccagaggggagccgggagcacgcggggagagtggcatcatggga
gcccctggcagacctggggagcccggcctggcgggcctgcccggcagtatcggcgcccct
ggacccatgggtagtcccggcatcaagggctcggcgggcgacgcggggcggcccggcaac
cagggcccgcccggtcaggcgggcgccccgggacccgagggccccaagggagactccggg
tccgagggacccacgggcccggcgggtcagccgggacctcagggccccgcgggagacagg
ggcctcccgggcctgcccgggtccgccggtccggccgggtcgcgaggcgtgcgcggagcg
acgggagagactgggccgccggggaaggccggcagcgagggccccccgggcccgcctgga
gtgtcgggaccgccgggtcagccgggccagccgggcgagcagggccccgagggaccgtcg
ggcaagtcgggtcccccggggatagcggggcggcccggggacaaggggcccatcggcccg
tccggcgcgccgggccagcagggacagcccggcatgcccggccctcctggtgccagcgga
ccctcgggctccccaggggagcgggggcagaagggcgagtccgggccccagggcgtcgac
ggactgcagggcgcgagaggcaagccgggaccttcagggccagaagggctgaagggagag
cgaggcgagccgggaccaggcggcgcgaagggacacagaggcctcatgggcctgcaaggt
ctccccggagctataggcatgccgggagacaggggcttccccggtccggccggaccgcct
ggcaaagacggcgagcctggacccaaaggcatgtcgggtcgcgacggcagcccgggccag
cccggcctgaacgggccgccgggacccaggggcccgcagggcgaggaggggcgccccggc
ccgccgggcggctccgggcccccggggcccccggggccgccgggagacgccatggggctc
ggctacgactacgccgcgctgtcggcgctgctcaaccagggacagagcaagggcccggac
ccgctgagcggagacgagccggtgcgggtgttcggcaaggagatcacagaagaggagcgg
cgccagctcgtcacgcaggcctaccaacacctcaagacgtccttcgagcgcttcaagcgg
cccgacggccagcgctcgtcgcccgccaagacgtgccgcgacctggccgtggcgcacccg
gagctgccgagcggtgaatactggatcgatcccaacgaaggagacgacagagatgccatc
ttggttcagtgtgagatagctgaaaggaaaacgtgcattctcccgagccctgcgaggacg
cctgagatgaactacatcggccaagagcctgaagtgtgggtcggggaaataagcggtggg
atgaagctgacctacaaggccgacagcaaccagctgggcttcctgcagctgctgtccagc
ggcgcggcgcagaacctcacctaccactgccgcaactccgtggcctactacgacgaggcc
aagcacacgtaccggcgcggcatgaagctgctcacgtggaacgacgccgagatcaccccg
cgcggcaaccaccggctgcgctacgaggtcaaggacgacggctgcaggtacaagagcaac
caatgggccaaaactgtggtctcctacagcacggataagacctcacgcctaccgatcgtg
gacgtggccctgcgcgacgtggggcatgagagccagaagttctggctggagctcggtcct
gtgtgctactcatga
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integrated database retrieval system
