Bacillus rossius redtenbacheri: 134534307
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Entry
134534307 CDS
T09888
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134534307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bror03021
]
134534307
03019 Messenger RNA biogenesis [BR:
bror03019
]
134534307
Transcription machinery [BR:
bror03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134534307
Messenger RNA biogenesis [BR:
bror03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
134534307
U7-dependent histone pre-mRNA processing factors
134534307
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
PDS5
Adaptin_N
INTS1_R4
HEAT_MROH2B_C
MSC6_N
Motif
Other DBs
NCBI-GeneID:
134534307
NCBI-ProteinID:
XP_063228749
LinkDB
All DBs
Position
7:complement(69120829..69153218)
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AA seq
1140 aa
AA seq
DB search
MTHKALDSRRSTAAQFFLQDNEELSSSYNKIVEWLNQASLSSSDNSKMEFLRKVQEIIIN
KDASLLDNFLDEVLGFQNDRSADVRKTIVGFIEEAIKKDPDVLPKVITNLAMLLEDPSVQ
VQKRVIQAAGQVYRCTLVWLSRVKNVTEEMEAAWSVMNRIKASIVNKVDSDNDGIRTHSV
KFLERVVLTQTYPTPDSMHRENDLSLEDIPLTLKVARRRKLEEEANMVFELLLKFHSSPH
ISSVNLMTCMGSLTLIAKMRPQFMGRVIAALETLHTNLPPTLSKSQVSSVRKHLKIQLLN
LLKHPSSVDYHTNITTLLTDLGATYQEVMKYYPKPDEVRKRQKRLAAESLVVQAVVAKRP
RVEAEGPQPPEEQEAAVSVEDAAAPPPPPSERAKKQTEVTLDLMEQFIAERLSPELATQL
VIASMSKLPEAMPPHFSAMYTPIAAAGTHGQIKHVARLMATQFASAGVGTGGKSKKLLPL
TKLVSMSEDDEIDATKSSVLNVVTGMMDDRDSKASRATLLPAGGPAKAPKQRIKTLKLSE
VTKPLDGETSGRMLVSAVQRVMRTEGATGPTGVGLLRSKMITTMAATFDARVRHEVLGFL
LEDVRARLDLALAWLYEEYSFMQGFSRVPGFLRRDVDPAGAYDELLCALARRLVDAKDSL
VTRLYLEAPHITEGAVELLKQLCRDEGRSAVGLGLLQELVLRRPPRQLVFLNALLEHTSH
ENPQVRAKAIECVTELYGRSELHSIVEEYAIFYLSFLRFPQPPDLLFGLERGRPTKSEAW
SDDIVRACLYLYMALLPVNEKLIHELARVYVQTSADVKRTILRLLEQPVRGMGMHSLELL
RLVEECPKGAETLVTRVIHILTEKTPPSSELVERVRELYHTRVSDVRFLIPVLNGLTKKE
VVAALPKLIKLNPVVVKEVFNRLLGTHSEYHSSPITPAELLIALHNIDPLKCELKMVIKA
TSLCFSDKQAYTQEVLAVVMQHLMEQSPLPTLLMRTVIQSLSLYPRLIGFVMNILQRLIL
KQVWTQKKVWEGFIKCCQRTQPQSFQVLLQLPALQLQDVFDSCSELQAPLLAHVEALTDN
QRTHIPQSIMDVLMGKRRAMAEEYVLGADVMSPTELTNNNNTNNNLAVFVLSCARCRRRS
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgactcataaagcactagattcccgacggagcaccgcagctcagttctttttgcaagat
aatgaagaattgtcttcttcgtacaataagattgtagaatggctgaatcaagcctctctt
tcctcttccgacaacagcaagatggagttccttcgcaaagtgcaagaaattatcataaat
aaggacgcgagccttttggacaacttcctggatgaagttctgggcttccagaacgatcgc
agcgcagacgtgcggaagacaatagttggcttcattgaggaagcaatcaagaaggacccg
gacgtgctgcccaaggtgatcaccaacctggcgatgctgctggaggaccccagcgtgcag
gtgcagaagcgcgtgatccaggctgccggccaggtgtaccgctgcacgctggtgtggctg
tcgcgcgtcaagaacgtcaccgaggagatggaggccgcctggtccgtcatgaaccgcatc
aaggccagcatcgtcaacaaggtggacagcgacaacgacggcatccgtacccactccgtc
aagttcctggagcgggtggtgctgacccagacctaccccacgcccgacagcatgcaccgg
gagaacgacctctcgctggaggacatccccctcaccctgaaggtggcgcgtcgtcgcaag
ctggaggaggaggcaaacatggtgtttgagctgctgctcaagttccacagctcgccgcac
atcagcagcgtcaacctcatgacgtgcatgggctcgctgacgctcatcgccaagatgcgc
ccccagttcatgggccgggtcatcgccgccttggagacgctgcacaccaacctgccgccg
acgctgtccaagtcgcaggtgagctccgtgcgcaagcacctcaagatccagctgctgaac
ctgctgaagcacccgtcctcggtcgactaccacaccaacatcaccacgctgctcaccgac
ctgggtgccacctaccaggaggtgatgaagtactaccccaagccggacgaggtgcggaag
cgccagaagcggctggccgcggagagcctggtggtgcaggcggtggtggccaagcggccc
cgggtggaggcggaggggcctcagcccccggaggagcaggaggcggcggtgtccgtggag
gacgcggcggccccccctcccccgccctccgagcgcgccaagaagcagaccgaggtcacg
ctcgacctcatggagcagttcatcgcggagcggctcagccccgagctggccacgcagctc
gtcatcgcctccatgagcaagctgccggaggcgatgccgccccacttcagcgcgatgtac
acgcccatagctgcggccggcacgcacggccagatcaagcacgtggcgcgcctcatggcg
acgcagttcgcctcggcgggcgtcggcacgggcggcaagagcaagaagctgctgccgctc
accaagctggtgtccatgagcgaggacgacgagatagacgcgaccaagagctccgtgctg
aacgtggtgaccggcatgatggacgaccgcgactccaaggcctcccgggcgacgctgctg
cccgcgggcggcccggccaaggcgccgaagcagcgcatcaagacgctgaagctgtcggag
gtgaccaagccgctggacggggagacgtccggccggatgctggtgagcgcggtgcagcgc
gtcatgcgcacggagggggcgacgggccccaccggggtcggcctgctccggagcaagatg
ataacgaccatggccgccaccttcgacgcgcgagtgcgccacgaggtgctggggttcctg
ctggaggacgtgcgggcgcgcctcgacctggcgctggcgtggctctacgaggagtacagc
ttcatgcaggggttcagccgcgtgccgggcttcctgcggcgcgacgtggacccggcgggc
gcctacgacgagctgctgtgcgccctcgcgcgccgcctcgtggacgccaaggactcgctg
gtgacgcggctgtacctggaggcgccccacatcacggagggggcggtggagctgctgaag
cagctgtgccgagacgagggccgctcggccgtgggcctgggactgctgcaggagctggtg
ctgcgacggcccccgcgccagctcgtcttcctcaacgccctgctcgagcacacctcccac
gagaacccgcaggtgcgcgccaaggcgatagagtgcgtgacggagctgtacggccgcagc
gagctgcacagcatcgtggaggagtacgccatcttctacctgagcttcctgcgcttcccg
cagccgcccgacctgctgttcggcttggagcggggccggcccaccaagtccgaggcctgg
tcggacgacatagtgcgcgcctgcctctacctctacatggccctgctgcccgtcaacgag
aagctcatacacgagctggcgcgcgtgtacgtgcagacgtcggcggacgtgaagcgcacc
atcctgcgcctgctggagcagccggtgaggggcatgggcatgcactccctggagctgctg
cggctggtggaggagtgccccaagggggcggagaccctggtcacgcgcgtcatccacatc
ctcaccgagaagaccccgccgagctcggagctggtggagcgggtgcgagagctgtaccac
acgcgggtgtcggacgtgcggttcctcatccccgtgctgaacgggctcaccaagaaggag
gtggtggcggccctgcccaagctcatcaagctgaaccccgtcgtggtgaaggaggtcttc
aacaggttactggggacgcactcggagtaccattcctcgcccatcaccccggcggagctg
ctcatagccctgcacaacatcgacccactcaagtgcgagctgaagatggtcatcaaggcc
acgtcgctgtgcttctccgacaagcaggcgtacacgcaggaggtgctggcggtggtgatg
cagcacctcatggagcagagcccgctgcccacgctgctgatgcgcaccgtcatccagtcc
ctgtcgctctacccgcgtctcatcggcttcgtcatgaacatcctgcagcgcctcatcctc
aagcaggtgtggacgcagaagaaggtgtgggagggcttcatcaagtgctgccagcgcact
cagccgcagagcttccaggtgctgctgcagctgccagccctgcagctgcaggacgtgttc
gacagctgcagcgagctgcaggcgccgctgctggcccacgtggaggccctcacggacaac
cagcgcacgcacatcccccagtccatcatggacgtgctgatgggcaaacggagagccatg
gccgaggagtacgtgctgggagctgatgtgatgtcgccgacggagctgactaataacaat
aacacaaacaacaacctagctgtgtttgttctctcctgtgccagatgtcgccgacggagc
tga
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