Bacillus rossius redtenbacheri: 134536285
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Entry
134536285 CDS
T09888
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror03008
Ribosome biogenesis in eukaryotes
bror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134536285
09123 Folding, sorting and degradation
03018 RNA degradation
134536285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bror03021
]
134536285
03019 Messenger RNA biogenesis [BR:
bror03019
]
134536285
03009 Ribosome biogenesis [BR:
bror03009
]
134536285
03016 Transfer RNA biogenesis [BR:
bror03016
]
134536285
Transcription machinery [BR:
bror03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134536285
Messenger RNA biogenesis [BR:
bror03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
134536285
Ribosome biogenesis [BR:
bror03009
]
Eukaryotic type
Pre-60S particles
RNases
134536285
Transfer RNA biogenesis [BR:
bror03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
134536285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
134536285
NCBI-ProteinID:
XP_063232103
LinkDB
All DBs
Position
10:complement(59564435..59644501)
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AA seq
940 aa
AA seq
DB search
MGVPAFFRWLSKKYVSVIVPCIEEKPKELNGVKIPVDATKENPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFECIDRLFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKESVEKIDEVARLRSELALKGCFLPPEKPKGDHFDSNCITPGTPFMARLSACLHYYVH
DRMNSDPAWRGIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHCLCGADADLIML
GLATHEPYFTIIREEFKPNKPRPCDICGQMGHEMKDCLGLERPAESSDHPPPDYGTEGEF
IFVRLNILREYLERELDMPGLPFQYDFERAVDDWVFMCFFVGNDFLPHLPSLEIREGAID
RLVTLYKKAVYKTGGFVTDSGHVYLERVQLILADLGEVEDQIFKKRQQDEISFRARMKAK
NRREKAIKNFRPNWVPQGQYSPQPLGRNASPVQNPRQTAYQGRMEAGGQRGGLGYDSQSG
PRGQKRKADEMDSDEEEEPNDEVRLWEDGFKDRYYESKFDVDPSNIKFRHKLAREYVRGL
CWVLQYYYQGCASWKWYFPYHYAPFASDFVDIGDLPTTFEKGTKPFQPLQQLMGVFPAAS
SSHVPAPWATLMSDPDSPIIDFYPVDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYY
DCLTTAEIRRNVRGDDRLYVTKENSGFSFIQGLYQNEVDSTVETSIMIDGMRGTVLLAED
CIKQGGSLSSPVMGLPIIYENSVRCIRFRDPKYDDSFVFPAKRLDGAVNPPRVLKPGDLS
PQQNRNWRPQIGMSPANKRASLGDAGHRMLGHHQQAAGVGQYSNVPPMMGNVSALNGALM
VQQLMMGNQQSWTGGHRQQQRPHSWHGGGGGGGGGGYDSGHDSRYTARTSGGQWGHHQGH
HQGHHQGHHQGHHQGQQRGYSQQRGRNSYNRSRSGYGGNY
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttcgatggctcagcaagaaatacgtatctgtaatagtaccg
tgcatcgaggagaagcccaaagaattgaatggtgttaaaatcccggtcgatgccacaaag
gaaaacccaaatggtgtggaatttgacaatctgtatttggatatgaatggcatcattcat
ccatgcacacatcctgaagacaagccagcaccaaagaatgaagatgaaatgatggtagca
atttttgagtgtatcgacaggctttttagtatcgtacgcccaaggaaacttctttacatg
gccattgacggagtggctccccgtgcgaaaatgaaccaacagaggtcgcgtcggttccgc
gcggcgaaggaaagcgtggagaagatcgacgaggtggcgcgcctgaggtcggagctggcg
ttgaagggctgcttcctgccgcctgagaagcccaagggagaccacttcgacagcaactgc
atcactccgggcacacccttcatggcccggctgtcggcatgcctgcactactacgtgcat
gaccgcatgaacagcgaccccgcgtggaggggcatcaaggtcatcctgtccgacgccaac
gttcccggagaaggggagcacaagatcatggacttcattcgcaggcagcgagcccagccg
gaccacgaccccaacacgcagcactgcctgtgcggggcggacgccgacctcatcatgctg
ggcctggccacccacgagccctacttcaccatcatccgggaggagttcaagcccaacaag
ccccgcccctgcgacatctgcggccagatgggccacgagatgaaggactgcctcgggctg
gagcggccggcggagagcagcgaccaccctccgcccgactacggcacggagggggagttc
atcttcgtgcgactcaacatcctgcgggagtacctggagcgcgagctggacatgcccggc
ctgcccttccagtacgacttcgagcgggcggtggacgattgggtgttcatgtgcttcttc
gtgggcaacgacttcctgccgcacctgccctccctcgagatccgcgagggggccatcgac
cggctcgtcacgctctacaagaaggccgtctacaagacgggggggttcgtcacggacagc
ggccacgtctacctggagagagtgcagctcatactggccgacctgggggaggtggaggac
cagatcttcaagaagcgacagcaagacgagatatccttcagggcgcgcatgaaggctaag
aacagaagggagaaggcaataaagaatttccgacccaactgggttccccagggtcagtac
tcgcctcagccactagggcggaatgcgagcccggtccagaacccgaggcagacggcgtat
cagggcagaatggaggccggcggacagagaggaggcctgggttatgactctcagtctggg
ccaaggggtcagaagcgaaaagcggatgaaatggattcagacgaggaagaagagcctaac
gacgaggtgcggctgtgggaagatgggttcaaggatcgctactacgagtccaagtttgac
gtggaccccagcaatataaagttcaggcataagctcgcacgtgagtacgtgcggggtcta
tgctgggtgttgcagtattactatcagggttgcgcctcatggaagtggtacttcccttac
cattatgctccattcgcatcagatttcgtggacattggagatttgccaacgactttcgag
aaaggaaccaagccgttccagccgctgcagcagctgatgggggtgttcccggccgccagc
agctcccacgtgccggccccgtgggcgacgctcatgagcgacccggactcgcccatcatt
gacttctacccggtggacttcaagatcgatctcaacggcaagaagtttgcctggcagggt
gttgccttgttgccatttgtcgacgagaataggctgttcaaagccttggagccgtattac
gactgtcttactaccgctgagatacggcgtaacgtccgtggtgacgataggctgtatgtt
acgaaggaaaactcaggtttttcgttcatccaaggcctctatcagaacgaagtagacagc
acggttgaaaccagtataatgattgatggcatgagaggcaccgtgttgcttgcggaagac
tgcatcaagcaagggggttctctttcatcaccagttatgggccttccaataatttatgag
aacagtgttcgttgcattcgcttcagggatccaaagtatgatgactccttcgtatttcca
gctaagagacttgatggagcagtgaaccccccgcgggtgctgaagcccggggacctgagt
ccgcagcagaacaggaactggcgtccgcagatcggcatgtctcccgccaacaagcgagcg
tctctaggagacgcaggccacaggatgctgggccaccaccagcaagcggcaggtgtgggc
cagtacagcaacgtgccgcccatgatgggcaatgtgtctgcactcaacggggcgctaatg
gtccagcaactgatgatgggcaatcagcagtcttggacgggcggccaccgccagcagcag
agaccgcactcctggcacggcggcggcggcggcggcggcggcggcggctacgactcgggc
cacgactccagatacaccgccaggacctcgggcgggcagtgggggcaccaccaaggacac
caccagggacaccaccagggccaccaccagggacaccaccagggccagcagcgaggctac
agccagcagagaggcaggaactcgtacaacagaagtaggagcggctacggtgggaactac
tga
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