Bacillus rossius redtenbacheri: 134539063
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Entry
134539063 CDS
T09888
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134539063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bror03041
]
134539063
Enzymes [BR:
bror01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134539063
Spliceosome [BR:
bror03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134539063
Complex C
U4/U6.U5 tri-SnRNP related factors
134539063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
T2SSE
AAA_30
nSTAND3
TsaE
SRP54
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134539063
NCBI-ProteinID:
XP_063236844
LinkDB
All DBs
Position
14:complement(5541609..5568887)
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AA seq
934 aa
AA seq
DB search
MSKRSGSSRSDSGRSGERKFQEATTSKYLSKYREKHSSDMDSDSSLDSDDSTEKERLKDL
RERDEFADRLKNKDKDKTRNVAHQSFSEKSAYEEAAKRLKLEAQDREKIIPKLRVESRRK
YLEKRKEDKVAELEADIIDDEFLFQEEVLSERERRERDHKRKLLRLARDHEEARELERVQ
RYHMPHDTRKGQTDGKYEEVDEREKAPHYEQRKWEEEQMSSAVFRFGARDAKDRRRQDDG
RQYDLVLEDQIEFIQALQMPGSKEAKEETVKITEAQKKRLNIEETKKSLPIFPFKEDLIQ
AIKEHQVLIIEGETGSGKTTQIPQYLREAGFTRDDKKIGCTQPRRVAAMSVSARVAEEMG
VKLGNEVGYSIRFEDCTSERTVIKYMTDGTLQREFLSEPDLQGYSVMIIDEAHERTLHTD
ILFGLMKDVARFRPDLKILISSATLDAQKFSDYFDDAPIFRIPGRRYPVDIYYTKAPEAD
YVDACVVSVLQIHATQPLGDVLVFLTGQEEIETCQELLQERVRRLGSKIRELLVLPVYSN
LPSDMQARIFTPTPPGARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLI
VVPISKASANQRAGRAGRVAAGKCFRLYTAWAYRHELEDNIVPEIQRVNLGNVVLMLKAL
GINDLVNFDFLDPPPHESLVLALEQLYALGALNHKGELTKLGRRMAEFPVDPMMGKMILA
SEKYKCSEEILTIAAMLSVNSAIFYRPKDKIIHADTARKNFFVPGGDHLTLLSLYGQWAD
TDFSTQWCYENFVQHRSLRRARDVREQLAGLMQRVEIELVSNPSESVNIRKAITAGYFYH
VARLSKDGHYRTVKHQQSVMIHPNSCLFEDLPRWVLYHELVFTTKEFMRQVTEIESKWLL
EVAPHYYKPRELEDATNKKMPKQVGKSRAELGAY
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagaagtggtagtagtagaagtgactcaggaagaagtggcgagcgcaagttt
caagaagccacgacgtcaaagtatctgtccaaatacagagaaaaacattcgtcagacatg
gattctgattctagtttggattcagacgacagcactgaaaaggaaagactcaaagatttg
cgagaaagagatgaatttgctgacaggcttaagaacaaagacaaagataaaacacgcaac
gtcgcgcaccaatcattttcagaaaaaagtgcgtacgaagaggcagcaaagcgactgaaa
ttggaagctcaagatcgtgaaaaaattataccaaagttacgtgtggagtcaagaaggaag
tatctagaaaagagaaaagaagataaagtagcagaacttgaagctgatattattgatgat
gaatttcttttccaagaagaagtgctgagcgagcgggagcgcagggagcgcgaccacaag
aggaagctgctgaggctcgccagggaccatgaggaggcccgggagctggagcgcgtgcag
cggtaccacatgccccacgacactcgcaagggccagacggacgggaagtacgaggaggtg
gacgagcgggagaaggccccccactacgagcagcgcaagtgggaggaggagcagatgtcg
tctgccgtgttccggttcggggcgcgcgacgccaaggaccggcgccgccaggacgacggc
cggcagtacgacctggtgctggaggaccagatagagttcatccaggcgctgcagatgccg
ggctccaaggaggccaaggaagaaactgtgaaaataacagaagctcaaaagaagaggtta
aacattgaagaaacaaagaaaagtcttcctatttttccttttaaagaagacttgattcag
gcaattaaggagcatcaggtgctgatcatcgagggggagacgggctccgggaagaccacg
cagatcccgcagtacctgcgcgaggcgggcttcacgcgggacgacaagaagatcggctgc
acgcagcctcggcgagtggccgccatgagcgtctcggcgcgcgtcgcagaggagatggga
gtcaagctgggcaacgaggttggttacagcataaggtttgaagactgcacttcagagcgc
actgtcatcaagtacatgacggacggcacgttgcagagggagtttctttctgagccggac
ttgcagggatacagtgtgatgatcatcgacgaagctcacgagcgcactctgcacacagac
atattgttcggactgatgaaggacgtggctcggttccgtccggacctcaagattctgata
tccagcgccaccctggacgcgcagaagttctcggactacttcgacgacgcgccgattttc
aggataccaggtcggcgctaccccgtggacatctactacacgaaggcgcccgaggcggac
tacgtggacgcgtgcgtggtgtcggtgctgcagatccacgccacgcagccgctgggcgac
gtgctggtgttcctcacgggccaggaggagatcgagacctgccaggagctgctgcaggag
cgggtccgcaggctgggctccaagatccgcgagctgctggtgctgcccgtgtactccaac
ctgcccagcgacatgcaggccaggatcttcacgcccacgccccccggggcccgcaaggtt
gtgctggcgacgaacatagctgaaacttcgctgaccatcgacaacatcatctacgtcatc
gacccgggcttctgcaagcagaacaacttcaactcccgcacgggcatggagtcgctcatc
gtcgttcccatttcgaaggcgtctgcgaaccagagggcggggcgcgcgggccgcgtggcg
gcgggcaagtgcttccggctgtacacggcgtgggcgtaccgccacgagctggaggacaac
atcgtgccggagatccagcgcgtcaacctgggcaacgtggtgctcatgctgaaggccctg
ggcatcaacgacctggtcaacttcgacttcctggaccctccgccccacgagtccctggtg
ctggcgttggagcagctgtacgccctgggagcgctgaaccacaagggggagctcaccaag
ctgggccgtcgcatggcggagttccccgtcgaccccatgatgggcaagatgatcctcgcc
tcggagaagtacaagtgctccgaggagatcctcacgattgcggccatgctgtcggtgaac
agcgccatcttctaccgcccgaaggacaagatcatccacgccgacacggcgcgcaagaac
ttcttcgtgccgggcggggaccacctgacgctgctgagcctctacggccagtgggcggac
acggacttctctacgcagtggtgctacgagaacttcgtgcagcaccggtcgctgcggcgc
gcgcgcgacgttcgcgagcagctggcggggctcatgcagcgcgtcgagatcgagctggtg
tcgaacccctctgagagcgtcaacatccgcaaggccatcacagcagggtacttctaccac
gtggcccgactgtccaaggacggccactaccgcacggtgaagcaccagcagtccgtcatg
atccaccccaacagctgcctgttcgaggacctgccccgctgggtgctgtaccacgagctc
gtcttcaccaccaaggagttcatgcgacaggtgacggagatcgagagcaagtggctgctg
gaggtggccccgcactactacaagccccgggagctggaggacgccaccaacaagaagatg
cccaagcaggtgggcaagtcccgggccgagctgggcgcctactga
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