Bacillus rossius redtenbacheri: 134542252
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Entry
134542252 CDS
T09888
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134542252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bror03019
]
134542252
03041 Spliceosome [BR:
bror03041
]
134542252
Messenger RNA biogenesis [BR:
bror03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134542252
Spliceosome [BR:
bror03041
]
Complex B
Other components
Prp19-related factors
134542252
Complex C
134542252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_2
TPR_12
TPR_15
TPR_8
RPN7
NRDE-2
ARM_TT21_C
DHR-2_Lobe_A
PPR
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
134542252
NCBI-ProteinID:
XP_063242429
LinkDB
All DBs
Position
4
Genome browser
AA seq
869 aa
AA seq
DB search
MFATEERDIEIVFNEEDLPYEEEILRNPFSVKHWLRYIEHKKGSPKHRVNIIYERALKEL
PGSYKLWYNYLKLRRRQVKGRCITDPSYQDVNNAFERSLVFMHKMPRIWLDYCQFLMDQC
RITRTRQVFDRALRALPITQHHRVWPLYLTFIRQHDVPETAVRVFRRYLKLCPEDAEDYI
EYLSEIHRLDEAAIKLAYIVNKEDFVSKHGKSNHQLWNELCELISKNPDKVRSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKRMEEAANNTNPTEEDEVELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKR
VKLYEGKPHEIINTYTEAVQTVDPKLAVGKLHTLWVAFAKFYEENGQIDDARLVFEKATL
VPYVKVEDLASVWCEWAEMEIRHENYEEALKLMQKATVMPARKVAYHDETETVQMRLYKS
LKVWSMYADLEESFGTFKSCKSVYDRIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEHCPPKFAKALYLLYAKLE
EEHGMARHAMAVYERATKAVLPEEMFELFNIYIKKAAEIYGVPKTRQIYEKAIEILTEEN
SREMCLRFAEMETKLGEIDRARAIYAHCSQMCDPRVTAEFWQTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSAATNVSGTVADLAPGAKDGMRMLEAKAAQMAQEDRP
SQPQPKGGSILFVRGETQGQDRDGTDKSRVINPDEINIDEDDDDSSSEEEGEEEEEGDDG
LPVQKQAIPAEVFGSLKPRPNNEEDSASD
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcgaccgaagaacgtgatattgaaattgtatttaatgaagaagacttaccttac
gaggaggagattctgagaaacccgttttcagtgaagcactggctgcgatacattgaacac
aagaagggcagccctaaacatagagtgaatattatatatgagagagcgctcaaagaactg
ccaggaagctacaagctatggtacaactacctgaagctgaggagacggcaagtaaagggt
cgctgcatcactgatccctcctatcaggacgtgaacaacgctttcgagaggtctcttgtg
ttcatgcacaagatgccgcgcatctggctggactactgccagttcctgatggaccaatgc
cgcatcacgaggacgcggcaggtgtttgaccgcgccctgcgcgccctgccgataacacag
caccacagggtgtggccgctctacctcaccttcatccggcagcacgacgtcccggagact
gcagtccgggtgttccggaggtacctcaagctgtgcccggaagatgcggaagactacata
gagtacttgagcgagatacacagactggacgaagcagctatcaagttggcatacattgtg
aacaaagaggactttgtatcgaagcacgggaagtcgaaccaccaactgtggaatgaactt
tgtgagctcatctcaaagaaccctgacaaagtcaggtccctgaatgttgacgccatcatc
cgcggagggctgcggaggtacacagatcagctgggccacctgtggaactccctggcggac
tactacgtgaggagtggcctgttcgagagggcccgcgacatctacgaagaggccattcag
acggtcaccacggtccgagacttcacgcaggtcttcgacgcctacgcccagtttgaggag
ctgagcctcagcaaaaggatggaggaagctgccaataataccaaccctactgaagaagac
gaggtggagctggagctgcgactggcgaggttcgagcacctcatggagcgccgcctgctg
ctgctcaactcggtgctgctccgccagaacccccacaacgtgcaggagtggcacaagcgc
gtcaagctgtacgagggcaagccccacgagataatcaacacttacacggaagctgtgcag
acggtggacccaaaactggcagtcgggaagctgcacactctgtgggtggcgtttgccaag
ttctacgaggagaacgggcagattgacgatgctcgcttggtgtttgagaaggccacgctc
gtgccgtatgtgaaggttgaagacttggcgtctgtgtggtgcgagtgggccgagatggaa
atcagacacgagaactacgaagaagctctcaagctgatgcagaaagcgacggtaatgcca
gcaaggaaggtggcgtaccacgacgagactgaaactgtgcagatgcgcttgtacaagtca
ctgaaagtgtggtccatgtacgcagatctggaggaaagttttggcacgttcaagtcttgc
aaatcagtatatgaccgtatcatcgacttgaagatagctactccacaaataataataaat
tatggcttgttccttgaagaacataactactttgaagaggcattcagggcatatgaaaaa
ggaattgcgctcttcaagtggccgaatgtttacgacatatggaacacgtacttgacgaag
ttcttgaagcgctacggtggcacaaaactcgagcgagctcgggacttgtttgaacagtgc
ttagagcattgcccaccaaagtttgctaaagctctgtatcttctgtatgcaaagctagag
gaggaacacgggatggccagacacgcgatggcagtgtacgagagagctaccaaagctgtt
cttccagaggagatgtttgagttgtttaacatctacataaagaaggcagccgagatctat
ggcgttcccaaaacaaggcagatctacgaaaaagccatcgagattcttaccgaagagaat
tccagggaaatgtgtctgagatttgcggaaatggagacgaaacttggagaaatcgacaga
gcacgtgccatttacgctcactgcagtcagatgtgtgatcctcgggtgactgccgagttt
tggcagacatggaaagagtttgaagttcgccacggcaacgaagacacgatgagagagatg
ctgcgaatcaagaggagcgtgcaagccacgtacaacacacaggtgaacatgatgtcggcc
cagatgctgtcggccgccacgaacgtgtccggcacggtggccgacctggcgccgggagcc
aaggacggcatgaggatgctcgaggcgaaggcagcccagatggcacaggaggatcgcccc
agccagccacagcccaaaggaggaagtatcctgtttgttcggggcgagacccaaggccag
gacagagacggcacggacaagtctcgagttattaaccctgacgagatcaacatcgatgaa
gatgacgacgacagttccagcgaggaggaaggggaggaggaggaggaaggagatgatggt
ctgccagtgcagaaacaagctattccagctgaagtatttggcagcttgaaacctaggcca
aataatgaagaagattctgcaagtgattag
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integrated database retrieval system
