Bacillus rossius redtenbacheri: 134546150
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Entry
134546150 CDS
T09888
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bror
Bacillus rossius redtenbacheri
Pathway
bror03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bror00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134546150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bror03019
]
134546150
Messenger RNA biogenesis [BR:
bror03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134546150
mRNA degradation factors
5'-3' decay
Decapping complex
134546150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
134546150
NCBI-ProteinID:
XP_063244773
LinkDB
All DBs
Position
1
Genome browser
AA seq
730 aa
AA seq
DB search
MCVRIKSHENTFSCRVQMANSFFGFNNPLNEQEEGLHDDFDFDFEDEEEEYDALNDETFG
ADASEGDWEHDHEKLVEITEKSRVHHSSYNGSTDHEDLELEAALGQLVLDDINDDRDHEK
DDKVKKDKSFKNNFVYSSSAPSVFPSPWSTDSSIKESSNALPDLPPGKTVRTVEELERQL
ISQSRTANQRAAVSGKHLESVGKDIKGKIIHNQESAYLLARTVGRGQPLRQNGVVMVRPF
LQQAAQGVGILPRPMAGMGIPPDVRHLQQQQQNRFLVPASDFHLFPPPPPFVIRQHFQPP
PCGRLLLGPYPRQGFHSPDTSMFRPMMHHNNLYNSGFRDRQYTSGLRHQEPYFKHRDNSH
HQNYRPHQNLHCRVDDEYAGMMSDREKTWLQNIQQLQLNSSPPHIDDYYYTIFSSRQADK
KNGENCRNRERRDSYNKDQQGTSKVYTPAQFENSLGKLQVGSVTAPRKIIDMDVVHQEGV
ENIAVAAPRDMRKLKQILLEVERLYLLLLQLEDLSSPMPELREAVQDSKEALQQKILATL
LADDWFVNILSFHKGKKLFVRFLRHVTDPHQTSALWARLLGGLVAIVRYDPDGAGVVLEM
FPFFSRWLQGATPTCFAELASSVVRAEEQRRGRRSILSLVLSDRFGVSVLAVMLVRAQSL
YPSLDESGQAVWLRLLRLLVDAVDLMPENTLVKPLQSVDVSALTNHFASCGFELTDQTHQ
KLKQIFCPSL
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtccgtattaaaagtcatgaaaatactttttcctgcagggtacaaatggcaaat
tctttctttggttttaataatcctctaaatgagcaggaggaaggcctgcatgacgatttt
gatttcgatttcgaagacgaggaagaggagtacgatgccctgaatgatgaaacgtttggc
gcagatgcatctgaaggtgactgggaacatgaccatgagaaacttgtggaaataactgaa
aaatctagggttcatcacagcagttacaatggttctacagatcatgaagatttggaacta
gaagcagctcttggacagctagtattagatgatatcaacgatgatagagatcatgagaaa
gatgacaaagttaaaaaggataagtcttttaaaaataactttgtttacagcagctcggct
ccctcagtttttccgtcaccttggtcgaccgattctagtatcaaggagagtagtaatgct
ttaccagacctacctccaggaaaaacagtacgcactgtggaagaattggaacgccagctt
atatcacagagtaggactgcaaaccaaagggcggcagtttcaggtaaacacctagaaagt
gttggcaaagatattaaagggaaaataatacataatcaggaatcagcatatttattggct
aggactgtggggcgaggacaacctcttcgacaaaatggggtggtcatggttcgtccattt
ttacagcaggcagcgcagggtgttggcattttacctcgtccaatggctggcatgggtatt
ccaccagatgtgagacatcttcagcagcaacagcaaaacagatttcttgtaccagcttca
gatttccatctctttccaccaccacctccatttgtgattcgtcaacacttccagccacca
ccttgtggaagattgctattaggaccttaccctcgccagggtttccactctcctgatact
tccatgtttcgaccaatgatgcatcacaacaatttatacaattcaggcttcagggacaga
cagtacacctctggtttgcgacatcaagaaccatactttaaacatcgagacaatagccat
catcaaaattatcgtccacatcaaaacttacactgccgtgtagatgatgagtatgctggc
atgatgtccgatcgcgagaaaacgtggcttcaaaatattcagcagttgcagttgaactct
tcgcctccgcacatagacgactattactacaccattttttcatcacgtcaggcagacaag
aagaatggggagaactgcagaaacagagagcggagagacagttacaataaggatcagcaa
ggaacttcgaaagtttacactcctgcacagtttgagaactctctgggcaaattgcaagtg
ggaagcgtgactgccccacggaagataatagacatggacgtggtacaccaggaaggggtg
gagaacatagctgtggcagctccgagggacatgcgcaaactgaagcagatactcctggag
gtggagaggctctacttgttgctgctacagttggaggacttgtcgagccccatgccggag
ctgagggaagccgtgcaggactcgaaggaagccttgcagcagaagatcctcgccacactg
ctggctgatgactggtttgtcaacatcctgtcgttccacaaagggaagaagctgttcgtg
cgcttcttgcgtcacgtgacggacccccaccaaacgtccgctctgtgggctcgcctgctg
ggaggcctcgtcgccatcgtgcggtacgacccggatggcgcgggtgtcgtgctcgaaatg
ttccctttcttcagccgctggctccagggggccacgccgacgtgcttcgcggagctggcg
tcctccgtggtgagggcggaggagcagcgccggggcaggaggagcatcctctcgctcgta
ctgagcgaccggttcggggtctctgtgctggccgtgatgctggtgcgcgcgcagtctctc
tacccgtccctggacgagagcgggcaggcagtgtggctgcgactgctgcgtcttctggtg
gatgctgtggacctgatgcctgaaaatacgctcgtcaagccactgcagtccgtggatgtg
tctgccttgaccaaccactttgcgagttgcgggttcgagctgaccgaccagacgcaccaa
aagttaaaacaaattttttgtccttctctttag
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