Brassica rapa (field mustard): 103827511
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Entry
103827511 CDS
T03449
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103827511
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103827511
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GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
RRXRR
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
103827511
NCBI-ProteinID:
XP_009101245
UniProt:
M4E7Q5
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All DBs
Position
A06:complement(26386850..26391378)
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AA seq
459 aa
AA seq
DB search
MASAHLNLGSYVFAFVSLSLAVVAPSVQGHVAVYDEYWTQRQTDALRETIKSYDPNPFNV
TDHFNHHAALAMETTGADNGTRRELRQVRRGRKTRRRGGRHHSLNAIDKCWRGDKNWHKN
RKKLADCVLGFGRKTTGGKKGQFYVVTDASDHDLINPKPGTLRHAVTRDRPLWIIFGRSM
IIKLQQELIITHDKTIDGRGANVHIMGGAGLTLQFVKNVIIHNIHIKHIKCGAGGMIRDC
EHHVGQRSKSDGDGINIFGATNIWIDHVSMTHCSDGMIDAIMGSTAITISNSHLTDHNEV
LLFGGKDGDVIDKKMQITVAFNHFGKRLVQRMPRVRYGLVHVVNNDYTHWEMYAIGGNKN
PTIISQGNRFIAPHKETCKQVTKREYTPYTEWKSWNWQSERDYFLNGAYFVNSGRANAWS
PAPKNPIHRKFAIRPQSGTGVRRLTKDAGTLGCTPGKSC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctcatttgaatcttgggagctacgtcttcgcctttgtctcgttatctcta
gccgtcgtggctccatcggttcaaggtcacgtcgcggtatacgatgaatattggacccaa
cgccaaaccgacgcattgcgagaaactataaaatcttatgacccgaacccgtttaacgtc
acggaccactttaaccaccatgccgcattagcaatggagacgactggtgcagacaacgga
acaaggagagagctccgacaagttagacgcggtcggaaaacaaggagacgtggcggaagg
caccactcccttaacgctatcgataaatgctggcgaggcgacaaaaactggcacaaaaac
cgaaaaaagctagcggactgcgtcctaggatttggtcggaaaacaaccggaggcaaaaag
ggacagttctacgtagtcaccgacgcatctgaccacgatctcatcaaccccaagccagga
actctaagacacgcagtgactcgcgacagaccgctatggatcatattcggtagatccatg
atcataaaactgcagcaagaactgatcataacacacgataaaactatcgatggtcgagga
gcgaatgtacatataatgggaggtgcaggtttaacgttacagttcgtgaagaatgtgatc
atacacaatattcatatcaaacacattaaatgtggggctggtgggatgatcagagactgt
gaacatcatgttgggcagcgttcaaagagtgatggtgatgggatcaatattttcggagcc
acgaatatttggatcgatcatgtctccatgactcattgttctgatgggatgatcgatgcc
attatgggatcgaccgccattactatctccaactcccatttaaccgaccataacgaggtg
ctgttgtttgggggtaaagacggggatgtgatcgacaagaaaatgcagataacggttgcg
tttaaccattttggtaagagattggtccaaagaatgccaagggtcagatacggtttggtc
catgtagtgaacaatgactacactcactgggaaatgtatgctattggtgggaacaagaac
cctaccattataagtcaaggcaaccgtttcattgctcctcataaagaaacctgcaagcag
gttacaaagagagagtatacgccttatacagagtggaagtcatggaactggcagtcagag
agagattacttcttgaacggagcttactttgtaaattcaggaagggcaaacgcgtggagc
cctgccccgaaaaacccaatccatagaaagtttgcgatccggcctcaatcaggaacaggt
gtaagaagactcactaaggatgctggtacgcttggttgtacaccaggcaagtcctgctga
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