Brassica rapa (field mustard): 103827605
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Entry
103827605 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103827605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103827605
03012 Translation factors [BR:
brp03012
]
103827605
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103827605
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103827605
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103827605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
ATPase
nSTAND3
AAA_19
Dicer_dimer
T2SSE
AAA_11
PhoH
Motif
Other DBs
NCBI-GeneID:
103827605
NCBI-ProteinID:
XP_009101368
UniProt:
M4E7Z7
LinkDB
All DBs
Position
A06:27042551..27049253
Genome browser
AA seq
1135 aa
AA seq
DB search
MKDRLPPPSLYVPPHQRLRSTPPAYAFHPLPLPHTQSQKPPLLPTRFVSAYDDSVSEVAS
LPEPVAFHCANLDEWRRNLSMLLRDPVKQEVISREKKDRRDFDKLAALATSLGLYSQAYA
KVVVFSKIPLPNYRFDLDDKRPLREVSVHTDLVKRVDAYFKDHLSKKSKRTNGIPANSFS
RTSSTSSMFTDEGLLEQPELPAASKTALDKILWQRSLQLRERQDYWEKSVEGQRMLECRR
CLPAYKQRDVVLSAISQNQVIVVSGETGCGKTTQIPQFILESEIEANRGALCSIICTQPR
KISAMSVSERVACERGEPLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRSLRGV
THVIVDEIHERGMNEDFLLIILKDLLPRRPELKLILMSATLDAELFSSYFGGAGVIHIPG
FTYPVGSYFLEDILEMSRYRLTPYNQIDDYGQERLWKMNKQIPRKRKSQIASVVEDALRA
ADFKEFSPETRESLSCWNPDCIGFNLIESLLRHICENERPGGILVFMTGWDDISSLKDKL
QIHPIFSDPNRVMLLACHGSMASFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVI
DCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGQCYHLYPKCVYDAFSEYQ
LPEILRTPLQSLCLQIKSLNFGTISEFLSRALQSPELLAVQKAIEYLKTIGALDENEQLT
ALGRYLAKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQ
FSRDHSDHLALVRAYEGYKRAEEEAGVYDYCWKNFLSIQSMRAVDSLRKEFFSLLKDTGL
IDGTPATCKSGGNDENLTRAVICYGLYPGICSVVHNERAFSLKTMEDGQVLLYSNSVNAR
ETKIPYPWLVFNEKIKVNSIFVRDSTAVSDSVLILFGGSVSKGDFDGHLKMLGGYLDFFM
KPAVAEMYQTLKKELDELIQSKLLNPKMDIQAHRDLLLAVRLLVSEDRCDGSFVFGRQAL
KPLGTSAVSTQPTLVSRTESGPGGDNSKSQLQTMLTRAGHAAPMYKTKQLKNSKFQSTVE
FNGTQIMGQPCSNKKTAEKDAAAEAIRWLMGGAKESHEHVNHMSNLLKRSKKVHL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtcttcctcctccttccctctacgttccgcctcaccagcgacttcgctcc
acccctccagcttacgcctttcatcctcttcctctcccccacacgcaatctcaaaagcca
ccgctcttgcccactcgctttgtctcggcctacgatgacagcgtttccgaggttgcttca
ctccctgagccggttgcatttcattgtgccaacttggatgaatggagaaggaacttgtct
atgcttttgcgcgatcctgtaaagcaagaagttatttccagggagaagaaagatcgaagg
gattttgataaacttgctgcactcgctacaagtcttggattgtatagtcaagcatatgct
aaggttgttgtgttcagtaagatcccactccccaactataggtttgatcttgatgacaag
agacctctgagagaggtgagtgtgcatacggaccttgtaaaaagagttgatgcttatttc
aaagaccacctcagtaaaaaatcaaagaggacgaatggtatccctgcgaattccttctca
agaactagtagcacaagcagtatgtttaccgatgaagggcttcttgagcaacctgagctc
ccggctgctagcaagacggcgctggacaaaattctttggcaaaggagtttgcagctgcgt
gaacgacaagactattgggagaaatcggtagaaggtcaaagaatgctggaatgtcgcaga
tgtctccctgcatataagcagagggatgtggtattgtcagcgatatcacaaaaccaggtc
attgttgtctctggagaaacaggttgtggcaagaccacacaaattccacagtttatatta
gaatcggagattgaagcaaaccgtggagctttatgcagtatcatatgtactcaaccaaga
aaaatatctgctatgtctgtttcggagagggttgcttgcgaaagaggagagccgttgggt
gaatccgttggatataaagttcgattggaaggtgttagaggaagagatacgcggctactg
ttttgcaccacaggcattttgttgagaaggttgttggtagatcgaagtttaagaggagtt
actcatgttattgtggatgaaattcatgagcgtggaatgaatgaagatttcttgcttatc
attcttaaagatctcctacctcgtcgcccagagcttaagctgattctgatgagtgcaact
ttagatgctgagcttttctcgtcatactttggtggggcaggtgtaattcacattccaggc
tttacgtatccagttggtagttatttcttagaggatattctggagatgtccaggtacaga
ttgactccgtacaatcaaattgatgattatggtcaagaaagattgtggaagatgaacaaa
cagatcccaagaaaaaggaagagccaaattgcgtctgttgtggaggatgcactgagagcg
gctgatttcaaggagtttagccctgagactcgagagtctttatcttgttggaatcctgat
tgcattggttttaatcttatagaatctctccttcgccatatatgtgagaatgagaggcct
ggtggtattttagtttttatgactggatgggatgatattagctctctgaaagataaactt
cagattcatccaatctttagcgatccaaaccgggttatgttgcttgcttgccatggttct
atggctagctttgagcagaggttaatatttgaagaacctgcaagtggagtgagaaagata
gttctggccactaatatcgctgaaacgagcatcacgatcaatgatgttgcttttgttatc
gactgtggaaaggcaaaagagacctcctacgatgcattaaataacaccccctgtttgctt
ccttcttggatttccaaggtttcagctcagcagagaagaggaagagctggtcgtgttcaa
cctggccaatgttaccatctgtacccaaagtgcgtatatgatgctttttcagaatatcag
ttgcctgaaattttgagaacgcctttgcagtcactgtgtctacaaatcaaaagcttaaat
ttcggaaccatatctgagttcttatcaagggcactgcaatctccagaactattggcggtt
caaaaggccattgaatatcttaagacaataggggcattggatgagaatgaacagctcaca
gctctaggtcgttatttggcgaagcttcccatggagccaaagcttggaaaaatgctcata
ctaggagctattctaggttgccttgatcccatattgactgttgcggctggcctgagtgtg
agagatcctttcttgacacctctggacaagaaggatctcgcagaagccgccaaatcccag
ttttcacgtgatcacagtgatcatcttgcacttgttcgggcatatgaagggtataaaaga
gctgaggaagaggctggggtttatgattactgctggaaaaactttctctcaatacagtcg
atgagagctgttgattctctccgaaaagagttcttctcattactcaaggataccggatta
atagatggaactccagcgacctgcaagtcaggagggaatgacgagaatcttacccgagct
gttatttgctatggattgtatccaggaatctgctcggttgtgcataatgagagagcattt
tccttgaagactatggaggatggccaagttcttctttattcgaattctgtaaatgctcgg
gaaacaaaaataccatatccgtggttggttttcaacgagaagataaaagtgaactctata
ttcgtgagggattcaacagctgtgtctgactctgtgcttatcctctttggcggtagcgtt
tccaaaggagattttgatggccacctcaaaatgttgggaggatacttggattttttcatg
aaacctgctgttgcagagatgtaccagaccttgaagaaagagcttgacgagctgatacag
agcaaattacttaatcctaaaatggatattcaagcacaccgtgacctcttattggctgta
aggttattggtctctgaggatagatgtgatgggagctttgtgtttggtcgccaagcactt
aagcctttaggaacgtcggcggtgtcaacacaaccgacattggtttcaaggaccgaaagt
gggccggggggtgacaattccaagagtcagctccaaacaatgctcacaagggctggtcat
gcagcaccgatgtataagacaaagcagttgaagaacagcaagttccaatccacagtagag
tttaacgggacgcaaataatgggacaaccttgcagcaacaagaagactgctgagaaggat
gctgcagctgaagctatacgatggctgatgggtggggctaaggaaagccatgagcacgtg
aatcatatgtcaaacctgctgaagagaagcaagaaggttcacctctga
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